PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g44640.1
Common NameLOC4344057, OJ1340_C08.133, Os07g0640000, OsJ_024311, PRMT3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 621aa    MW: 67942.7 Da    PI: 4.271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g44640.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078111129220
                       EETTTTEEESSHHHHHHHH CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                       kC  Cg++Fs++s+L  H+
  LOC_Os07g44640.1 111 KCWSCGQVFSSNSELCGHL 129
                       7***************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-3431171No hitNo description
PfamPF127562.8E-657130IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805778IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.1505.3E-39253413IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE profilePS5167875.491253582IPR025799Protein arginine N-methyltransferase
SuperFamilySSF533352.69E-63259567IPR029063S-adenosyl-L-methionine-dependent methyltransferase
CDDcd024402.07E-11294413No hitNo description
PfamPF136491.5E-11295410No hitNo description
Gene3DG3DSA:2.70.160.118.7E-41417601No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019919Biological Processpeptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0034969Biological Processhistone arginine methylation
GO:0005829Cellular Componentcytosol
GO:0008469Molecular Functionhistone-arginine N-methyltransferase activity
GO:0035242Molecular Functionprotein-arginine omega-N asymmetric methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MATREHELRP EQERLGEDRE EYEDGEEEEE EGEEGWDDWE SDGDDAGGGG GGGGLLCLFC  60
SARFDSESSL FSHCASEHRF DFYRVVKETG MDFYGCIKLI NFVRSKVAEN KCWSCGQVFS  120
SNSELCGHLH ALEIPQLEGK VPWGDDVYLK PFLEDDSLLH SLSVFDDDDE DDCGMPMEKG  180
GCSAGNGSLA ETCESNLKSI INDGSDVIDR FERTCTIEST DGECSGSLAQ EPSDKQLKIA  240
RASAAARGIK SVDESYFGSY SSFGIHREML GDKVRTEAYR DALLGNPSLM NGATVLDVGC  300
GTGILSLFAA KAGASRVIAV DGSAKMVSVA TEVAKSNGFL YDENMEMQQK RDTQVITVVH  360
TKAEELNHKI QVPSNKFDVL VSEWMGYCLL YESMLSSVLY ARDHFLKPGG AILPDTATIF  420
GAGFGKGGTS LPFWENVYGF DMSCIGKEVT GNSARFPVVD ILASEDIVTE TAVLNSFDLA  480
TMKENEMDFT SSFELRLSES GVSQSGVTWC YGIILWFDTG FTNRFCKEKP VNLSTSPFST  540
PTHWSQTIFT FEEPIAMAKE ESAVVSSASV GTDECPAVMI RSRISIVRAS EHRSIDISIE  600
TTGISSDGRK RSWPVQIFNL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2fyt_A4e-6525356226307Protein arginine N-methyltransferase 3
3smq_A4e-6525356226307Protein arginine N-methyltransferase 3
4hsg_A4e-6525356226307PRMT3 protein
4qqn_A4e-6525356226307PRMT3 protein
4ryl_A4e-6525356226307PRMT3 protein
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329906980.0
Expression AtlasA3BMN9-
Functional Description ? help Back to Top
Source Description
UniProtMethylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g44640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g44640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1054890.0AK105489.1 Oryza sativa Japonica Group cDNA clone:001-127-B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647334.10.0PREDICTED: probable protein arginine N-methyltransferase 3
SwissprotA3BMN90.0ANM3_ORYSJ; Probable protein arginine N-methyltransferase 3
TrEMBLA0A0D3GU310.0A0A0D3GU31_9ORYZ; Uncharacterized protein
STRINGLOC_Os07g44640.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP789599