PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g40080.1
Common NameLOC4343773, Os07g0590100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 200aa    MW: 20194.6 Da    PI: 8.3974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g40080.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000624567123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ Cgk F +   L  H  +H
  LOC_Os07g40080.1 45 FRCSLCGKAFASYQALGGHKASH 67
                      89**********99998888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-124469IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.8664572IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-84567No hitNo description
SMARTSM003550.0264567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-8107134No hitNo description
PfamPF139122.3E-7111134IPR007087Zinc finger, C2H2
SMARTSM003554.6112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.014112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEQGGGAADG GDLISLCLMA LAAAARGEST ALALALAPPP PELHFRCSLC GKAFASYQAL  60
GGHKASHRKP SAAAAAPPAH RDVVVAAAPA SSGRVAADAD AASEADGRRR RHVCSLCRRG  120
FATGQALGGH KRFHYLHGPS VSATVSSAAT AASVGAAFDL NVAPIKEIAG EQRRCGEEAD  180
DDDEAESPSP AKKPRRRPG*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379896260.0
Expression AtlasQ0D507-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g40080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g40080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0037500.0AP003750.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1174_G05.
GenBankAK1113010.0AK111301.1 Oryza sativa Japonica Group cDNA clone:002-181-B04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646226.11e-137PREDICTED: zinc finger protein 1
TrEMBLA0A0E0QAL31e-137A0A0E0QAL3_ORYRU; Uncharacterized protein
TrEMBLQ0D5071e-137Q0D507_ORYSJ; Os07g0590100 protein
STRINGLOC_Os07g40080.11e-137(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
MonocotsOGMP148981718