PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g40000.1
Common NameLOC4343768, Os07g0589000, OSJNBb0005G07.123, OSNPB_070589000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 227aa    MW: 23216.2 Da    PI: 7.6435
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g40000.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.52e-282102196
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ ++++l+a+pe +r ++++sl+yeA  r+ +Pv Gavg+++ ++++l+
  LOC_Os07g40000.1   2 SCNGCRVLRKGCSEGCVLRPCLqwidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRAAVFQSLLYEAAGRTINPVGGAVGLLSGGSWHLC 94 
                       6*********************9999888999************************************************************* PP

            DUF260  89 qlkaelal 96 
                       q++++++l
  LOC_Os07g40000.1  95 QAAVDTVL 102
                       **999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.2961107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-242100IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEGCVLR PCLQWIDGAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR  60
AAVFQSLLYE AAGRTINPVG GAVGLLSGGS WHLCQAAVDT VLRGGGIQPL PDQVDAAAAG  120
GRDVFASTAR RAMGGCSTFS TAKRSTTTTT TKNPGTPHDA AAAAPQPEPS CDLGLWLSPG  180
SPPAPGDRRS GGRRADTPSM NSEGSVTTCG VVGDGEREPE LLNLFV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.932500.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329798370.0
Expression AtlasQ7EZ26-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g40000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g40000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698130.0AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647207.11e-163PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN114e-68LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A0E0QAK71e-163A0A0E0QAK7_ORYRU; Uncharacterized protein
TrEMBLQ7EZ261e-163Q7EZ26_ORYSJ; Os07g0589000 protein
STRINGLOC_Os07g40000.11e-163(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4031699
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.14e-60LOB domain-containing protein 37