PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g39970.1
Common NameLOC4343765, Os07g0588700, OSJNBb0005G07.120, OSNPB_070588700, ZFP39
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 227aa    MW: 24483.1 Da    PI: 7.2905
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g39970.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011143165123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C   F++   L  H+r+H
  LOC_Os07g39970.1 143 HKCSICRLEFPSGQALGGHMRVH 165
                       79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.77E-895165No hitNo description
PfamPF139129.4E-996120IPR007087Zinc finger, C2H2
SMARTSM003550.8997119IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.66397119IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
PfamPF139125.1E-9143165IPR007087Zinc finger, C2H2
SMARTSM003550.025143165IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621143165IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGLNEKPLVP PLSPTPVDFR AHQVFPSKHH DFDTSKSRNI SGSVAIGSDS EEEYLATSLL  60
MLAHGIRDET KDIRGMGDVK GVGVDTLELV KPSQRAYECS VCGKVYWCYQ ALGGHMTCHR  120
NLFAQVVAGD ELSSDRTMVV KGHKCSICRL EFPSGQALGG HMRVHYVGGV EGGSVKEKNV  180
VKTKVTGALK LVLKDFDLNV PVVATMVGDE AESSHSEAKA RMMTLP*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO376238800.0
Expression AtlasQ84Z14-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g39970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g39970
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3952940.0AY395294.1 Oryza sativa (japonica cultivar-group) C2H2-type zinc finger transcription factor (ZFP39) mRNA, complete cds.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647208.11e-168PREDICTED: zinc finger protein AZF3
TrEMBLQ84Z141e-168Q84Z14_ORYSJ; C2H2-type zinc finger transcription factor
STRINGLOC_Os07g39970.11e-168(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-22C2H2 family protein
Publications ? help Back to Top
  1. Huang J,Wang JF,Wang QH,Zhang HS
    Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid.
    DNA Seq., 2005. 16(2): p. 130-6
    [PMID:16147864]