PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g39940.1
Common NameLOC107275987, Os07g0588400, OSNPB_070588400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 280aa    MW: 30453.1 Da    PI: 6.0914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g39940.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-102032431055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  LOC_Os07g39940.1 203 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 243
                       9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14194259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12198256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-12202247No hitNo description
PfamPF000107.8E-8203243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAQFLGAHGD HCFTYEQMDE SMEAMAAMFL PGLDTDSNSS SGCLNYDVPP QCWPQHGHSS  60
SVTSFPDPAH SYGSFEFPVM DPFPIADLDA HCAIPYLTED LISPPHGNHP SARVEEATKV  120
VTPVATKRKS SAAMTASKKS KKAGKKDPIG SDEGGNTYID TQSSSSCTSE EGNLEGNAKP  180
SSKKMGTRAN RGAATDPQSL YARKRRERIN ERLRILQNLV PNGTKVDIST MLEEAVQYVK  240
FLQLQIKLLS SDDTWMYAPI AYNGVNISNI DLNISSLQK*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0X817
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g39940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g39940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0039850.0AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646227.10.0PREDICTED: transcription factor bHLH54-like
TrEMBLA0A0P0X8170.0A0A0P0X817_ORYSJ; Os07g0588400 protein
STRINGLOC_Os07g39940.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10481454
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-38root hair defective 6-like 4