PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g39310.1
Common NameLOC107276408, OJ1301_C12.8, OsJ_24890, P0453G03.32
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 634aa    MW: 67636.1 Da    PI: 6.0185
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g39310.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61e-055981123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ Cgk F r  nL+ H r H
  LOC_Os07g39310.1 59 FVCEVCGKGFQRDQNLQLHRRGH 81
                      89*******************88 PP

2zf-C2H215.64.6e-05137159123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cgk++  + +Lk H +t+
  LOC_Os07g39310.1 137 WTCQRCGKRYAVQADLKAHTKTC 159
                       58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.0E-85881No hitNo description
SMARTSM003550.0145981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6355981IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-55981IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035588102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.0E-8132157No hitNo description
SMARTSM0035590137157IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.787137165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MPPNPTGTEG EPGPAVEPAP AGAGAAPVVK KKRNLPGTPD PDAEVIALSP GTLLATNRFV  60
CEVCGKGFQR DQNLQLHRRG HNLPWRLRQR GPGAAPPRRR VYVCPEPGCV HHNPTRALGD  120
LTGIKKHFCR KHGEKRWTCQ RCGKRYAVQA DLKAHTKTCG TREYRCDCGT LFTRRDSFVT  180
HRAFCGALVE ETGRVLAVPA PPSPRPPDLE AEENVDKDKD KEEEVKEKEK EKELEENEDS  240
PVAEVDEPQP SQAVAEVPQQ CAPSPPPPPP ILQEHPQPVV AVVPNVDEQE VVAKPAVIAK  300
IEVEDERDEE VCFQEVDRYK DAELEDSNLL DNDTPMLPCF LPSPSEAIGT DGSSTSCGTG  360
SSVTNAIAPA TTTSTFAGLF ASVTTSSTPQ SRSLRDLIGV DPTFLCLAIG APSSLFPQTN  420
ASDPCSFAPP PAPHMSATAL LQKAAEVGAS QSSSSFLKEF GLAASTSSSP PSKLSQGRFT  480
TGNTPTTSHP HPHPHPHPHP PQGRFMDNVP QPPPPAKLPH RMFTDNSVQQ WHHRSNQQME  540
MEPGPMLPGG LGLGLTYDTG NSGLPDLMMG PSALYGPKPA TLDFLGLGIG GTMGGSTANG  600
GLPALMVGGE LDMGSAQAPW EEAKRKTNGR TIL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.609470.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XI88
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g39310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g39310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0042760.0AP004276.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0453G03.
GenBankAP0041850.0AP004185.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1301_C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647948.10.0PREDICTED: protein indeterminate-domain 1-like
TrEMBLQ7XI880.0Q7XI88_ORYSJ; Uncharacterized protein
STRINGLOC_Os07g39310.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.14e-93C2H2 family protein