PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g38750.1
Common NameLOC107277023, OJ1562_B11.121, OJ1699_E05.42
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 316aa    MW: 33367.1 Da    PI: 7.4217
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g38750.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-174999155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s++ GVr+++ +grWvAeI+d +   ++ r +lg+f ta+ Aa+a+++a++ l+g
  LOC_Os07g38750.1 49 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETADAAARAYDEAARLLRG 99
                      79********.7*********32...35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-114999IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1949108IPR016177DNA-binding domain
CDDcd000181.50E-1749107No hitNo description
PROSITE profilePS5103219.84950107IPR001471AP2/ERF domain
SMARTSM003802.1E-3350113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2750107IPR001471AP2/ERF domain
PRINTSPR003679.3E-75162IPR001471AP2/ERF domain
PRINTSPR003679.3E-77389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MELNFQVQPP VFQLQDYCYY YSQEVAAAAS PAAKPTKPRG RKKGSTSHSK FVGVRQRPSG  60
RWVAEIKDTT QKIRMWLGTF ETADAAARAY DEAARLLRGA EARTNFAPRI SPDCPLAVRI  120
RGILHHKKLK KARSAAAATA GSPGAASKKR STTAAAAAAT PTITTTSNSN SDGAGSACGG  180
SSSSSSSTDS CDGAVKQGGG GGGAPTDASE VYRPDFVHAG AEEFDSWMFD TAFGPFPELD  240
SFAAVDAVTP PPATASPEES SAGTPPVEMA EFERIKVERR ISASLYAMNG LQEYFDKVFD  300
ASACDPFWDF SPLCH*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ZL38
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g38750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g38750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0038450.0AP003845.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1699_E05.
GenBankAP0037580.0AP003758.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1562_B11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646240.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A0E0ALR60.0A0A0E0ALR6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0I2P50.0A0A0E0I2P5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QA810.0A0A0E0QA81_ORYRU; Uncharacterized protein
TrEMBLA2YMX70.0A2YMX7_ORYSI; Putative uncharacterized protein
TrEMBLI1QEI80.0I1QEI8_ORYGL; Uncharacterized protein
TrEMBLQ6ZL380.0Q6ZL38_ORYSJ; Putative AP2 domain containing protein
STRINGBGIOSGA024035-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os07g38750.10.0(Oryza sativa Japonica Group)
STRINGORGLA07G0253000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-22related to AP2 11