PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g38090.2
Common NameLOC4343641, OJ1092_A07.129, Os07g0568300, OsJ_023829
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 658aa    MW: 69391.9 Da    PI: 7.0719
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g38090.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08278300426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       ++C++f+r G C+ Gd+C F+Hg
  LOC_Os07g38090.2 278 VPCPNFRRPGGCPSGDSCEFSHG 300
                       79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.42E-1366147IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.9E-1566148IPR020683Ankyrin repeat-containing domain
SMARTSM002480.666899IPR002110Ankyrin repeat
PfamPF127964.8E-868136IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.21768100IPR002110Ankyrin repeat
PROSITE profilePS5029718.90868144IPR020683Ankyrin repeat-containing domain
CDDcd002041.44E-1270147No hitNo description
PROSITE profilePS5008812.529104139IPR002110Ankyrin repeat
SMARTSM002480.0044104136IPR002110Ankyrin repeat
PROSITE profilePS5010313.995274302IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4274301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5275303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-6278301IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6278300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4306339IPR000571Zinc finger, CCCH-type
SMARTSM0035621310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MGELADLVVV PSQPPLAGGR RDRLAALLEL AAADDVDGLR GALAEGGEEA AELADGVGLW  60
YGRSKAYEAR TPLMVAATYG SAGVVSLLVG LGGCVDVNRR PGADGATALH CAASGGSRNA  120
VAVVKLLLAA GADPATPDSA GRFPADVILA PPASPDALGD LEVLLGRRRA LAVATSVASG  180
SSSPPLSSSP DEGNRSPSSR SSSLSPITVD RGKKEYPVDP TLPDIKSSVY ASDEFRMFAF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKHPYTAVPC PNFRRPGGCP SGDSCEFSHG  300
VFESWLHPSQ YRTRLCKEGA ACARRICFFA HDEDELRHVP HNSGAGLLSP RASSSIDMTA  360
AAALGLLPGS PTRHFAPPPV SPSAGSNGGA AAAHWLQGSR LRSSFNARDA AVDDLGMLLE  420
WESQYLGALC LPPSSRPQPR LSAGLSIRPT IAPSNLEDMY ASDMAMSPRF PNDQGHSVYS  480
PAHKSALLNK LHQQKGLLSP VNTNRMYSPR ALDPSSLAHS PFGGMSPRSP RTMEPTSPLS  540
ARVGAPATQR PSVGSPRNSS AWGTVGSPMG KVDWGVDSEE LVRLRRPAQP GFGEDETDVS  600
WVQSLVSNAE LNGKRGEVQG MPGTSALMNR PDLNNQGDLL DQTVIGAWLE QMHLDQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A3e-1124033314118RING finger protein unkempt homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.149480.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329779130.0
Expression AtlasQ84SL2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g38090.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g38090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647507.10.0PREDICTED: zinc finger CCCH domain-containing protein 50
RefseqXP_015647508.10.0PREDICTED: zinc finger CCCH domain-containing protein 50
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A0E0QA210.0A0A0E0QA21_ORYRU; Uncharacterized protein
STRINGLOC_Os07g38090.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-124CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ye R,Yao QH,Xu ZH,Xue HW
    Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development.
    Plant J., 2004. 38(2): p. 348-57
    [PMID:15078336]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]