PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g35870.2
Common NameOs07g0543000, OSNPB_070543000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 215aa    MW: 24171.9 Da    PI: 9.344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g35870.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-1154101454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  rE+ RRd++N++f eL  +l +    + +K++K++iL  A++ + +L
  LOC_Os07g35870.2  54 SKACREKVRRDKLNERFLELGAVLEPG---KTPKMDKSSILNDAIRVMAEL 101
                       6789**********************9...9**************998777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-1541117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.52E-948106No hitNo description
PROSITE profilePS5088813.33250101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1451124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-854101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-956107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MYLLLYIIVT YGILKYKFIF FTSAEINGSV DCEHGKEQPT NKRPRSESGT RPSSKACREK  60
VRRDKLNERF LELGAVLEPG KTPKMDKSSI LNDAIRVMAE LRSEAQKLKE SNESLQEKIK  120
ELKAEKNELR DEKQKLKAEK ESLEQQIKFL NARPSFVPHP PVIPASAFTA PQGQAAGQKL  180
MMPVIGYPGF PMWQFMPPSD VDTTDDTKSC PPVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.265080.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329783790.0
Expression AtlasA0A0N7KNL9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g35870.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g35870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683610.0AK068361.1 Oryza sativa Japonica Group cDNA clone:J013146F13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647705.11e-138PREDICTED: transcription factor ILR3
SwissprotQ9FH371e-76ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0N7KNL91e-158A0A0N7KNL9_ORYSJ; Os07g0543000 protein
STRINGLOC_Os07g35870.11e-137(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.16e-78bHLH family protein