PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g35870.1
Common NameLOC4343509, OJ1729_E01.17-1, Os07g0543000, OsJ_24621, OsMYC1, OSNPB_070543000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 257aa    MW: 27873.7 Da    PI: 5.9248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g35870.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.7e-1196143454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++  rE+ RRd++N++f eL  +l +    + +K++K++iL  A++ + +L
  LOC_Os07g35870.1  96 SKACREKVRRDKLNERFLELGAVLEPG---KTPKMDKSSILNDAIRVMAEL 143
                       6789**********************9...9**************998777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1483159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-990148No hitNo description
PROSITE profilePS5088813.33292143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1493166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-896143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-998149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MASPEGSTWV FDCPLMDDLA AAAGFDAAPA GGFYWTTPAP PQAALQPPPP QQQPVAPATA  60
APNACAEING SVDCEHGKEQ PTNKRPRSES GTRPSSKACR EKVRRDKLNE RFLELGAVLE  120
PGKTPKMDKS SILNDAIRVM AELRSEAQKL KESNESLQEK IKELKAEKNE LRDEKQKLKA  180
EKESLEQQIK FLNARPSFVP HPPVIPASAF TAPQGQAAGQ KLMMPVIGYP GFPMWQFMPP  240
SDVDTTDDTK SCPPVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.265080.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329783790.0
Expression AtlasQ7XXQ5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g35870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g35870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8372600.0EU837260.1 Oryza sativa Japonica Group clone KCS222A01 bHLH transcription factor mRNA, complete cds.
GenBankAB1102230.0AB110223.1 Oryza sativa Japonica Group OsMYC1 mRNA for bHLH-HALZ myc like protein, complete cds.
GenBankAB1101960.0AB110196.1 Oryza sativa Japonica Group mRNA for hypothetical protein, complete cds, clone: 23C4AG047.
GenBankAK0588890.0AK058889.1 Oryza sativa Japonica Group cDNA clone:001-007-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647705.10.0PREDICTED: transcription factor ILR3
SwissprotQ9FH371e-80ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0D3GS300.0A0A0D3GS30_9ORYZ; Uncharacterized protein
TrEMBLQ7XXQ50.0Q7XXQ5_ORYSJ; BHLH transcription factor
STRINGLOC_Os07g35870.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7551766
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-75bHLH family protein
Publications ? help Back to Top
  1. Moriguchi K, et al.
    Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations.
    Plant Cell, 2005. 17(2): p. 389-403
    [PMID:15659629]