PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g22770.1
Common NameLOC4343006, Os07g0410700, OsJ_23940, OSNPB_070410700, P0710F09.111
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 240aa    MW: 25357.1 Da    PI: 9.8115
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g22770.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.3e-1777126355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + GVr+++ +gr++AeIrd + ng  +r+++g+f++ae Aa a+++a+++ +g
  LOC_Os07g22770.1  77 FIGVRRRP-WGRFAAEIRDSTRNG--ARVWIGTFDSAEAAAMAYDQAALSARG 126
                       57******.**********44465..***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.0E-2776140IPR001471AP2/ERF domain
PROSITE profilePS5103221.45676134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-2677135IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2077136IPR016177DNA-binding domain
PRINTSPR003677.6E-87788IPR001471AP2/ERF domain
PfamPF008471.7E-1277126IPR001471AP2/ERF domain
PRINTSPR003677.6E-8100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAEHFSHAGM YIGYTADAAA SSSSSSSSSS SSSSEMLRFD TGWPDETPAP SSVAGRRRSA  60
GGDHRQGRGQ TEAAAAFIGV RRRPWGRFAA EIRDSTRNGA RVWIGTFDSA EAAAMAYDQA  120
ALSARGAAAA LNFPVERVRE SLHALSLGAA GGSPVLALKR RHSKRKRRKK AELLAAAAAT  180
AATANATPQT RRISKSTELT TATTDEQKRF VVELEDLGAE YLEELLWLSE INGGSDPAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2277135664ATERF1
3gcc_A3e-2277135664ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159165RRHSKRK
2163168KRKRRK
3163169KRKRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.368170.0leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329726300.0
Expression AtlasQ8H312-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g22770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g22770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0053250.0AP005325.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0710F09.
GenBankAK0626120.0AK062612.1 Oryza sativa Japonica Group cDNA clone:001-105-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646205.11e-170PREDICTED: ethylene-responsive transcription factor 15
SwissprotQ8LDC84e-42ERF92_ARATH; Ethylene-responsive transcription factor 1B
SwissprotQ8VYM04e-42ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A0E0HZF71e-170A0A0E0HZF7_ORYNI; Uncharacterized protein
TrEMBLB8B5E91e-170B8B5E9_ORYSI; Putative uncharacterized protein
TrEMBLQ8H3121e-170Q8H312_ORYSJ; Os07g0410700 protein
STRINGBGIOSGA024428-PA1e-170(Oryza sativa Indica Group)
STRINGLOC_Os07g22770.11e-170(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-22ethylene response factor 1