PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g22730.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 222aa    MW: 22888.3 Da    PI: 8.9855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g22730.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-1775125255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       g+ GVr ++ +gr++AeIrd + ng   r++lg+f tae Aa a+++a+++ +g
  LOC_Os07g22730.1  75 GFIGVRKRP-WGRFAAEIRDSTRNG--VRVWLGTFETAEAAAMAYDQAALSARG 125
                       789******.**********44465..***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.7E-2975139IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2075135IPR016177DNA-binding domain
PROSITE profilePS5103221.7275133IPR001471AP2/ERF domain
PfamPF008479.4E-1275125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2776134IPR001471AP2/ERF domain
PRINTSPR003671.4E-87687IPR001471AP2/ERF domain
PRINTSPR003671.4E-899115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEQHSHCWYY GGGMAVTAAA GAGAASSTSS ESQPSGYDYE TAGSAEVSAP GGGAGRERAA  60
RKEEGGAGAA AAAAGFIGVR KRPWGRFAAE IRDSTRNGVR VWLGTFETAE AAAMAYDQAA  120
LSARGAAAAL NFPVERVRES LRALALGAAG GSPVLALKGR HSKRKRRKRS ELAGATATAN  180
KTTTTTSATT GGEHKQIVLE LEDLGADYLE ELLWMSEQTS H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2376134664ATERF1
3gcc_A1e-2376134664ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167KRKRRK
2162168KRKRRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g22730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g22730
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0053250.0AP005325.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0710F09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645812.11e-155PREDICTED: ethylene-responsive transcription factor 15
SwissprotQ8LDC84e-43ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D3GPZ91e-155A0A0D3GPZ9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FYX91e-155A0A0E0FYX9_ORYNI; Uncharacterized protein
TrEMBLA2YKI11e-155A2YKI1_ORYSI; Putative uncharacterized protein
TrEMBLI1QA281e-155I1QA28_ORYGL; Uncharacterized protein
STRINGBGIOSGA024429-PA1e-155(Oryza sativa Indica Group)
STRINGLOC_Os07g22730.11e-155(Oryza sativa Japonica Group)
STRINGORGLA07G0097000.11e-155(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.15e-19ethylene-responsive element binding factor 15