PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g18840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1030aa    MW: 120047 Da    PI: 7.0397
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g18840.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.92.9e-12264338166
              FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkakl 66 
                       +++n+Y +++GFs+++ +s ++   krn+e+++ tf+C+k+ k++ ++k       ++ er+t+++  t+Ck+ +
  LOC_Os07g18840.1 264 NYFNFYTYMAGFSIVNVHSARTtskKRNREVIRVTFKCYKYVKADCNTKPetvdetATGERKTNEVIGTECKCVM 338
                       59**************99998888899******************9999899999889999************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-11264339IPR004330FAR1 DNA binding domain
PfamPF105515.1E-34461553IPR018289MULE transposase domain
PROSITE profilePS5096610.398746782IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-6746781IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-7757784IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MKQLAGNSKN FSETEAKLDK TKNSEADIGC SALNESEKSI IENNDKGTIS CMNMQEINSE  60
NGANNAKVDY ENNVLSLLDQ DYIADSFISY TSLMEHIISS QPKRCNELKV EGTQNDKIKT  120
GIGQDYQKVD ESLNSHVEYQ SEQRCSMDIL NLQESVQDKS LEQTSEIGYS NVDNQSQHAW  180
SLDIFNLQES VQEPILEQSS DIGNINGNGV DDAVMNDELL TEEDIEQFLE EEQQEALKGN  240
NANIDRKYIP ELDQKFKSII EAQNYFNFYT YMAGFSIVNV HSARTTSKKR NREVIRVTFK  300
CYKYVKADCN TKPETVDETA TGERKTNEVI GTECKCVMLS PPDEVRFLRS HKYLSTEEWV  360
LIRTLKECHI PTRNMIVILS VLRGGLTSLP YTKKDISNVR TEINRETSSN DMIQCLTYLK  420
KKQEENPNFF YEFDLDENRK VRNFFWTDGR SRDWYHKFGD CISFDTTFLT NRYNLPFAPF  480
VGVSGHGNTI LFGCAFLHDE TTETFEWLFT TFLKCMNGKQ PKTIITDQDG AMRAAIKNIF  540
REAKHRNCFF HIISKALKRS GSLFKKRQGL YAIYSDIIHN CLTEEEFEVL WQDMIQEFNL  600
QEINFLAHMW HIRKRFIPVY FKIDLCPFIQ STALSEGTNS RFKKNVGPQY SIRSFLTEYE  660
RVMDTIQNLE QHDHHESRTK RPTSFWSNYS IEYQAVKLYN NKIFKRFQAQ LRKTFELQVE  720
EIEKFKCYAV FEAENVISKQ IRKRKYLVMM DLDTEEYTCI CAMFQKDGIL CSHILKIMLH  780
LSIKEIPEKY IMHRWRKNHK STEIIKGKEI IPVSESSVLR FNILSRKFAE IASKGAKTVK  840
AYKFLMEESE KIDEKLNTMF SHEFEGADKQ QGHEENNSFS PTAEVNEKSE NTHIHGDIRN  900
EEDYIEDPDI ANSKGRPKQR YKTIREQIED KETNHCSHCG RTEHTFPTCP FKHIEFDLAR  960
KRKRKIPSKP QKSGEEEKKE ATSKKRKPNK KENTEIGKSH QDEVQQLSKR VKKKSEINTS  1020
KSCVMKRKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1959964RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g18840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g18840
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0056740.0AP005674.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1126F07.
GenBankAP0043980.0AP004398.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0438G07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649296.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLJ3MVQ90.0J3MVQ9_ORYBR; Uncharacterized protein
STRINGLOC_Os07g18840.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-72FAR1-related sequence 5