PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g17230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 1358aa    MW: 153107 Da    PI: 6.0862
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g17230.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.8e-1874158186
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+kv tpsdv+++grlv+p ++ae +       +++e++ l++ed  g+sW++ +  r++s    lt GW++F + n+L++gD+v F++  
  LOC_Os07g17230.1  74 FDKVVTPSDVGNLGRLVIPWQHAECYfprdvPANEREGVVLRFEDDAGNSWRFLY--RGSS----LTLGWSHFFRKNRLDAGDMVSFYRGA 158
                       89*********************888***99778899******************..9999....***********************543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2565170IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-2171160IPR015300DNA-binding pseudobarrel domain
CDDcd100178.04E-1672156No hitNo description
SMARTSM010192.0E-1074170IPR003340B3 DNA binding domain
PfamPF023622.8E-1574160IPR003340B3 DNA binding domain
PROSITE profilePS5086311.02574172IPR003340B3 DNA binding domain
SuperFamilySSF520472.82E-29350533No hitNo description
Gene3DG3DSA:3.80.10.101.6E-25353530IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525401.09E-37546798IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.4E-32574826IPR002182NB-ARC
PRINTSPR003647.5E-8578593No hitNo description
PRINTSPR003647.5E-8648662No hitNo description
PRINTSPR003647.5E-8745759No hitNo description
SuperFamilySSF520581.87E-328611084IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.5E-149401070IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.87E-3211241265IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.109.7E-1111281336IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003647.5E-813021318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1358 aa     Download sequence    Send to blast
MEPGSSSREG EQQEPANERL TATGGGGGGG GGSPVSDQEL SDGEEVSDGE YQAGDDFSGY  60
AVRGRGFVEK EHIFDKVVTP SDVGNLGRLV IPWQHAECYF PRDVPANERE GVVLRFEDDA  120
GNSWRFLYRG SSLTLGWSHF FRKNRLDAGD MVSFYRGASE ATRDRLFIHS KRRMHILPTL  180
GYSDPQVHIN RLFQLLVRVR TMVSSFGKSG SPSPPNSPLP TVQNFTYKAL KDCLQDLHYY  240
SLLSMMGRNH KSQSTSAKIR DTIPTLDALI QLRSLSDPVF RIPAAATSHC ILLCRGVLGI  300
MGFLCSDENM KEDHRMLQVP AFDDLNYSAQ DKITRMKEQT MPSSLADPIY LLPTAIRNLL  360
YLDLSNCSDI VQLPPSLGSS LHMLSALNLS CCYSLRALPD SLVCLYDLQI LLLSFCHNLQ  420
NLPVSFGDLS NLRLLDLSGC RSLRLFPSSF VNLGSLENLN LSDCIRLMGI PQNFEDLQKL  480
EYLNFAGCYR VDLPVYCLTN LVNLKCLTLS NHTDIKDFPY SFTDLKRHLY LSRWWKYNWV  540
HTQCNLKSYR CHQQRIINSL LSDGSDEGDI TSEQSLTSIC IFGERGTGKT ELLHEIYNDQ  600
KILEGFHLRI WINMCDKKRL LEKIIEFTAC AYCYDAPSSI LEETVREELN GKRFLLVLND  660
ADIENQCFWT DVWKVSNVGA AGSALIVTTR SKEVASLFGA MKPYYMNPLS KEECFMVFQE  720
HADCGFDINN DHELTKVGWK IVEKCGGNLL CMKALSGLLW HSKTALSEID SLVGGIVPAL  780
RLCYDLLPSH LKQCFKFCSL FPKDYVFVKH HIIQLWISQG FVYPEEDSQP EDTGLQYFNE  840
FLCRSFFQHC PFSNDHEDKF VMHELFHDLA RSVSKDESFS SEEPFFSLPE NICHLSLVIS  900
DSNTVVLTKE HRHLQSLMVV RRSATEYSSS FVPLLKILGL NDLLMKCGFL RALNLSCTTI  960
VDLPGSIGRM KHLRFLAMNN TKIKSLPTEI GQLNTLQTLE LKDCCCLIEL PESTKNLMKL  1020
RHLDVQKEPG NIHVGMPSGL GQLTDLQTLT VFNIGDDLSH CSIRDLKNLS GLRGHVHITG  1080
LQNITAGDDA KEANLVGKQF LQALTLEWCC SSEEMEDESD KEIANQVLQN LQPNTSIQEL  1140
AIQNYPGNSF PNWIKDSGLC MLVSITIDNS QDCNEIPYLG DLPCLKFLFI QKMYAVENFG  1200
QRSNSLTTDG KHAPGFPSLE ILNLWEMYSL QFWNGTRYGD FPQLRGLSIS RCPKLSNLPP  1260
LISLLYLSFH CGDQLPALSE FPSLKSLKIE GFQKLKSVSF CPEMPLLQKL EISDCKELVS  1320
IDAPLLSVSN LKVVRCPKLH FGGSWLEGCL MWEEFKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-207117311117DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12232TGGGGGGGGGS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.596890.0flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567656390.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g17230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g17230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3185810.0AK318581.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence.
GenBankAK2890240.0AK289024.1 Oryza sativa Japonica Group cDNA, clone: J090090I16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644837.10.0PREDICTED: uncharacterized protein LOC4342906 isoform X1
TrEMBLA0A0E0Q6J80.0A0A0E0Q6J8_ORYRU; Uncharacterized protein
STRINGLOC_Os07g17230.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1356923
MonocotsOGMP125771216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-29B3 family protein