PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g17180.1
Common NameOs07g0272700, OsJ_23813, OSJNBb0002J01.26, OSJNBb0032G22.1, OSNPB_070272700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 606aa    MW: 64333.4 Da    PI: 3.7925
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g17180.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.49.1e-26111441128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk...d 89 
                       lppG+rF+Ptd elv+++L ++++gk+l+l+ vi e+d ++v Pw+L ++ +++ +e +fF++++ k+ +g+r++r +  sg W+ +      
  LOC_Os07g17180.1  11 LPPGLRFDPTDGELVSRFLLRRLQGKPLPLNGVILEADPLSVPPWKLLAE-HGRGDEGFFFAEARAKNGKGSRQKRtVEGSGLWQGQRVcadG 102
                       79****************************99***************744.4567799******************55669***966542222 PP

               NAM  90 kevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++l+      + e v+ k  L f+ ++ ++g ++ Wvmhey++
  LOC_Os07g17180.1 103 EKLLVPdgggvEVEIVWRKYLLSFF-AEGERG-SSGWVMHEYAV 144
                       2333335555444559999999999.444554.89*******86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-328163IPR003441NAC domain
PROSITE profilePS5100529.62511163IPR003441NAC domain
PfamPF023655.6E-1512143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAAGGGGADG LPPGLRFDPT DGELVSRFLL RRLQGKPLPL NGVILEADPL SVPPWKLLAE  60
HGRGDEGFFF AEARAKNGKG SRQKRTVEGS GLWQGQRVCA DGEKLLVPDG GGVEVEIVWR  120
KYLLSFFAEG ERGSSGWVMH EYAVTSPAEL AASPIRLYRV RFSGHGKKRK REPQSGEDGV  180
GRARAAPQSA GTETALLEER VMPPQPAPQS VGTEDALVEE RIPPPQPVPI PPIAGTEDAL  240
DVGTEDVRGR AAPQSAGTES ALLEECVLPP QTAPQITGTG VALLDEVVPP PQTVSISPPA  300
ALVDAVDDAD CANQGCSGVM DDSTMVFSHL PDMITLPAEE GDAAGGAALA SMDYSWADFE  360
FPEINMDELP NCIDFTTTDP SCLDIELSMG DLHEPQSTGI ESDLLEEFVP QPQPVLVPPL  420
AALVEVADSS EGPDQGCSVV MHDSSAVFTH LSDPIVLPEE EEADRPDAPA GTMSLDYQNY  480
SLSDFEFPEY PLLDVAGDAD GADQCSSNVM DDSSMVFSHL EDLITLPAEE AEADACSAAP  540
APSLDNQKYS SQGIIDSEAP ALSDFEFPET IDEVLNSINF TMADPSCLDM EFSMDDLLDF  600
DPPAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-121115317151NO APICAL MERISTEM PROTEIN
1ut4_B1e-121115317151NO APICAL MERISTEM PROTEIN
1ut7_A1e-121115317151NO APICAL MERISTEM PROTEIN
1ut7_B1e-121115317151NO APICAL MERISTEM PROTEIN
3swm_A1e-121115320154NAC domain-containing protein 19
3swm_B1e-121115320154NAC domain-containing protein 19
3swm_C1e-121115320154NAC domain-containing protein 19
3swm_D1e-121115320154NAC domain-containing protein 19
3swp_A1e-121115320154NAC domain-containing protein 19
3swp_B1e-121115320154NAC domain-containing protein 19
3swp_C1e-121115320154NAC domain-containing protein 19
3swp_D1e-121115320154NAC domain-containing protein 19
4dul_A1e-121115317151NAC domain-containing protein 19
4dul_B1e-121115317151NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6Z4J4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g17180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g17180
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0058800.0AP005880.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0032G22.
GenBankAP0051720.0AP005172.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0002J01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ6Z4J40.0Q6Z4J4_ORYSJ; Os07g0272700 protein
STRINGLOC_Os07g17180.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9888212
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-13NAC domain containing protein 47