PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g12510.1
Common NameLOC4342759, OSJNBa0016A21.102, OSJNBa0066H10.135
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 283aa    MW: 30602.7 Da    PI: 10.8225
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g12510.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.3e-2160110255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +++GVr+++ +grW+AeIrdp+eng  +r++lg+f+tae Aa+a++ a ++l+g
  LOC_Os07g12510.1  60 RFTGVRRRP-WGRWAAEIRDPKENG--RRVWLGTFDTAEAAAAAYDDACLRLRG 110
                       689******.***********9998..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-2860119IPR001471AP2/ERF domain
PROSITE profilePS5103223.70960118IPR001471AP2/ERF domain
CDDcd000189.69E-1360118No hitNo description
SMARTSM003801.9E-2960124IPR001471AP2/ERF domain
PfamPF008473.7E-1460110IPR001471AP2/ERF domain
PRINTSPR003672.1E-96172IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2161119IPR016177DNA-binding domain
PRINTSPR003672.1E-984100IPR001471AP2/ERF domain
PRINTSPR012175.3E-9118130No hitNo description
PRINTSPR012175.3E-9131152No hitNo description
PRINTSPR012175.3E-9162178No hitNo description
PRINTSPR012175.3E-9180197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAMEGEVEGG GRRRVVRIIF RDEDATDSSS SEEEGEGEVV AARRVVVKRT RLRCQEVERR  60
FTGVRRRPWG RWAAEIRDPK ENGRRVWLGT FDTAEAAAAA YDDACLRLRG PGAALNLPSR  120
RCVAPAPPPP PPPPPPTAEE KKLLLFPPPL PPRKKAMLFP LPLPPRKKPL LYPPPLPPKK  180
KPLPPPSPPP QPPLPEKENT PLPPLLLPPK KKPLPPPSPT AAAKEEPIEL EHAAPPPPFV  240
PRPVWPLLAS GGGGKRKKQS GCGGRIPALN TAAAAVEETG RA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2059120162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2059120465ATERF1
3gcc_A1e-2059120465ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.676530.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172318190.0
Expression AtlasQ8H2L8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g12510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g12510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0057640.0AP005764.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21.
GenBankAP0055160.0AP005516.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0066H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645363.10.0PREDICTED: formin-like protein 3
TrEMBLQ0D7P20.0Q0D7P2_ORYSJ; Os07g0227600 protein
TrEMBLQ8H2L80.0Q8H2L8_ORYSJ; Pathogenesis-related genes transcriptional activator Pti6-like protein
STRINGLOC_Os07g12510.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP2364833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-15ERF family protein