PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g09590.1
Common NameLOC4342637, OsJ_23423
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 257aa    MW: 27583.4 Da    PI: 7.3943
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g09590.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11138185455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  LOC_Os07g09590.1 138 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQSLQ 185
                       8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.69E-11132189No hitNo description
SuperFamilySSF474592.88E-18132201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-18134200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.355134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-9138185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDPAPSLAAE LWRPHHHRHH FEASSVVTDQ GSGSRGGGGS GRRRPRSDAG PEDDDLSKVV  60
STSAASGGGG GGGQDSDAPE AKRLKPMKSS DKNDSLRTEA GTDSGNSSKA ADKNATPPEP  120
PKQDYIHVRA RRGQATDSHS LAERARREKI SERMKILQDL VPGCNKVIGK ASVLDEIINY  180
IQSLQHQVEF LSMKLEAVNS HMINGIVAFP SKDFGAQPYN TAAGLTFDPQ TTREFAQGST  240
SEWLHMQIGN AYERVT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.904611e-127flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976068621e-127
Expression AtlasA3BHG5-
Function -- GeneRIF ? help Back to Top
  1. Results indicate that RICE SALT SENSITIVE3 (RSS3) can specifically interact with bHLH094 (Os07g0193800) and bHLH089 (Os03g0802900).
    [PMID: 23715469]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g09590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g09590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2426450.0AK242645.1 Oryza sativa Japonica Group cDNA, clone: J090025G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645823.10.0PREDICTED: transcription factor bHLH79
SwissprotQ9LV178e-56BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A0E0Q5740.0A0A0E0Q574_ORYRU; Uncharacterized protein
TrEMBLA2YJ330.0A2YJ33_ORYSI; Putative uncharacterized protein
TrEMBLA3BHG50.0A3BHG5_ORYSJ; Uncharacterized protein
STRINGBGIOSGA024674-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os07g09590.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-68BIG PETAL P
Publications ? help Back to Top
  1. Toda Y, et al.
    RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation.
    Plant Cell, 2013. 25(5): p. 1709-25
    [PMID:23715469]