PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g06620.4
Common NameFIL1, LOC4342449, Os07g0160100, YAB1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family YABBY
Protein Properties Length: 168aa    MW: 18661 Da    PI: 9.0587
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g06620.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY244.71.9e-7511551170
             YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                       ++v+++se+vCyv+Cn+Cntil+v+vP+++++++vtvrCGhCt++ls++la ++q++++++h          ++++++++n+ s+++++++++
  LOC_Os07g06620.4   1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDH----------QNRGFQGNNFGSYDIASRNQR 83 
                       57999********************************************************8..........99******************* PP

             YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       ts++++ +++++++ +p     irPPekrqrvPsaynrfikeeiqrik+snP+ishreafsaaaknWah+P++hfgl
  LOC_Os07g06620.4  84 TSTAMYPMPTSQQQVSP-----IRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 155
                       *************9999.....9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-636155IPR006780YABBY protein
SuperFamilySSF470954.58E-989149IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.108.0E-6103149IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSVQFTSEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVRCG HCTMVLSMDL APFHQARTVQ  60
DHQNRGFQGN NFGSYDIASR NQRTSTAMYP MPTSQQQVSP IRPPEKRQRV PSAYNRFIKE  120
EIQRIKTSNP EISHREAFSA AAKNWAHLPR LHFGLSVADG GGGGGSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.747071e-32flower| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379905751e-32
Expression AtlasQ7XIM7-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected throughout panicle development with the strongest expression in immature panicles, and weakest in mature panicles. Abundantly found in the stamen and carpel primordia of young spikelets. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17216490}.
UniprotTISSUE SPECIFICITY: Preferentially expressed in flowers. Expressed in leaf blades and leaf sheaths. Does not show polar expression pattern. {ECO:0000269|PubMed:15604733}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g06620.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g06620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7509320.0FJ750932.1 Oryza sativa clone KCS005G02 MADS-box transcription factor mRNA, complete cds.
GenBankCT8325770.0CT832577.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z37, full insert sequence.
GenBankCT8286830.0CT828683.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA249C03, full insert sequence.
GenBankCT8286820.0CT828682.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240F12, full insert sequence.
GenBankCT8286810.0CT828681.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230C13, full insert sequence.
GenBankAB2740130.0AB274013.1 Oryza sativa Japonica Group OsYABBY1 mRNA for OsYABBY1 protein, complete cds.
GenBankAK0700450.0AK070045.1 Oryza sativa Japonica Group cDNA clone:J023038F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647415.11e-125PREDICTED: protein YABBY 1 isoform X2
SwissprotQ7XIM71e-119YAB1_ORYSJ; Protein YABBY 1
TrEMBLA0A0E0LHD21e-120A0A0E0LHD2_ORYPU; Uncharacterized protein
STRINGBGIOSGA025186-PA1e-110(Oryza sativa Indica Group)
STRINGOB07G12810.11e-110(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-56YABBY family protein
Publications ? help Back to Top
  1. Sawa S, et al.
    FILAMENTOUS FLOWER, a meristem and organ identity gene of Arabidopsis, encodes a protein with a zinc finger and HMG-related domains.
    Genes Dev., 1999. 13(9): p. 1079-88
    [PMID:10323860]
  2. Jang S, et al.
    Ectopic expression of OsYAB1 causes extra stamens and carpels in rice.
    Plant Mol. Biol., 2004. 56(1): p. 133-43
    [PMID:15604733]
  3. Toriba T, et al.
    Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1.
    Mol. Genet. Genomics, 2007. 277(5): p. 457-68
    [PMID:17216490]
  4. Dai M, et al.
    The rice YABBY1 gene is involved in the feedback regulation of gibberellin metabolism.
    Plant Physiol., 2007. 144(1): p. 121-33
    [PMID:17369428]