PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g06620.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family YABBY
Protein Properties Length: 157aa    MW: 17732.1 Da    PI: 9.0575
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g06620.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2207e-6811471160
             YABBY   1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                       ++v+++se+vCyv+Cn+Cntil+v+vP+++++++vtvrCGhCt++ls++la ++q++++++h        ++++++++++n+ s+++++++++
  LOC_Os07g06620.3   1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDH--------QVQNRGFQGNNFGSYDIASRNQR 85 
                       57999********************************************************9........99********************* PP

             YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160
                       ts++++ +++++++ +p     irPPekrqrvPsaynrfikeeiqrik+snP+ishreafsaaakn 
  LOC_Os07g06620.3  86 TSTAMYPMPTSQQQVSP-----IRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNV 147
                       *************9999.....9*******************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.4E-566147IPR006780YABBY protein
SuperFamilySSF470959.03E-791145IPR009071High mobility group box domain
CDDcd000844.90E-4111138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSVQFTSEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVRCG HCTMVLSMDL APFHQARTVQ  60
DHQVQNRGFQ GNNFGSYDIA SRNQRTSTAM YPMPTSQQQV SPIRPPEKRQ RVPSAYNRFI  120
KEEIQRIKTS NPEISHREAF SAAAKNVSTL IVNTFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.747079e-33flower| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379905759e-33
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g06620.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g06620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0987520.0AF098752.1 Oryza sativa clone FIL1 unknown mRNA.
GenBankFJ7509320.0FJ750932.1 Oryza sativa clone KCS005G02 MADS-box transcription factor mRNA, complete cds.
GenBankCT8325770.0CT832577.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z37, full insert sequence.
GenBankCT8286840.0CT828684.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN084I04, full insert sequence.
GenBankCT8286830.0CT828683.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA249C03, full insert sequence.
GenBankCT8286820.0CT828682.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240F12, full insert sequence.
GenBankCT8286810.0CT828681.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230C13, full insert sequence.
GenBankAB2740130.0AB274013.1 Oryza sativa Japonica Group OsYABBY1 mRNA for OsYABBY1 protein, complete cds.
GenBankAK0700450.0AK070045.1 Oryza sativa Japonica Group cDNA clone:J023038F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647414.11e-107PREDICTED: protein YABBY 1 isoform X1
SwissprotQ7XIM71e-109YAB1_ORYSJ; Protein YABBY 1
TrEMBLA0A0E0E7N01e-107A0A0E0E7N0_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0Q4A41e-107A0A0E0Q4A4_ORYRU; Uncharacterized protein
TrEMBLD3U2G41e-107D3U2G4_ORYSA; MADS-box transcription factor
STRINGLOC_Os07g06620.21e-105(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.14e-47YABBY family protein