PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g05010.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 419aa    MW: 44503.5 Da    PI: 4.5754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g05010.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.55e-18233279455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  LOC_Os07g05010.2 233 VHNLSERRRRDRINEKLRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 279
                       6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.67E-18225283No hitNo description
SuperFamilySSF474591.57E-21227294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.768229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-22233287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-15233279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-18235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDAGATARSS SSSAMMMNQK KPLLSDGELV ELLWQDGGVV AHAQTRHRSS DVLARSGVTG  60
EEETASAWFA DGGGGGGGDD DALGLGMGRD IYSQLWHSFA NVDGHAAGAL ALATPTPTPR  120
AAARSDDVSS RLDEADLSIC GSNAVVAPAL PADDDDDIDA AAPREEEEEE EEGPGAARAA  180
GASSSGGSGS GSGSYPLFKR GREELVDSLS EVADETRPSK RPAAKRRTRA AEVHNLSERR  240
RRDRINEKLR ALQELVPHCN KTDKASILDE AIEYLKSLQM QVQIMWMTTG IVPMMFPGTH  300
QLMPPMGMGL NTACMPGAQA QGLNQMQRTT YYMNNSLPNQ MPQIPSPAMN APSVPDDMQN  360
DNRIRGPRNP FLHCNDTLTA TAQVPGLFTY GSQIAEQNEI QELLSGAVIP SSSDGTIK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224241KRRTRAAEVHNLSERRRR
2237242ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.445160.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329702630.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g05010.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g05010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4002760.0JN400276.1 Oryza sativa Japonica Group rice phytochrome-interacting factor 4 (PIF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648045.10.0PREDICTED: transcription factor PIF4 isoform X1
RefseqXP_015648044.10.0PREDICTED: transcription factor PIF4 isoform X1
RefseqXP_015648043.10.0PREDICTED: transcription factor PIF4 isoform X1
TrEMBLB9FVG40.0B9FVG4_ORYSJ; Uncharacterized protein
STRINGLOC_Os07g05010.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-28phytochrome interacting factor 3