PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g04560.1
Common NameOJ1417_E01.102, OsJ_23027, P0495H05.42
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 344aa    MW: 37925.3 Da    PI: 4.8438
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g04560.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.87.6e-48321622128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        pGfrFhPtdeelv++yL++k+++k+l++ e+ike+diyk++P+d+  +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++
  LOC_Os07g04560.1  32 LPGFRFHPTDEELVTFYLRRKIAEKRLSI-EIIKEMDIYKHDPSDFLkTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIC 123
                       69***************************.89*************96345556789************************************* PP

               NAM  94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+    +g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  LOC_Os07g04560.1 124 SAagggGGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 162
                       *988877777***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5231195IPR003441NAC domain
PROSITE profilePS5100551.23131195IPR003441NAC domain
PfamPF023657.0E-2533162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MKRGCEDELG AGDVILRGVE EVEEEDDDDL VLPGFRFHPT DEELVTFYLR RKIAEKRLSI  60
EIIKEMDIYK HDPSDFLKTS TVGSEKEWYF FCLRGRKYRN SIRPNRVTGS GFWKATGIDR  120
PICSAAGGGG GDCIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPPPPADDL AAGRSSPPPS  180
LQEAEVWTIC RIFQRNITHK KQPQPQLAVA AAAVPAPVPD ATSSITGSLE SDSAGDDVVE  240
YMNTLQPPPA SNVNGGYSNQ RYFQEQWNSS SNDNTTVFHQ HAAAAPPPEP SPATAMAGFG  300
HDQSVLSSPA PSDFYYKDGC NDDIYRMVME LADPSLFYDH IYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-433320119171NO APICAL MERISTEM PROTEIN
1ut4_B3e-433320119171NO APICAL MERISTEM PROTEIN
1ut7_A3e-433320119171NO APICAL MERISTEM PROTEIN
1ut7_B3e-433320119171NO APICAL MERISTEM PROTEIN
3swm_A4e-433320122174NAC domain-containing protein 19
3swm_B4e-433320122174NAC domain-containing protein 19
3swm_C4e-433320122174NAC domain-containing protein 19
3swm_D4e-433320122174NAC domain-containing protein 19
3swp_A4e-433320122174NAC domain-containing protein 19
3swp_B4e-433320122174NAC domain-containing protein 19
3swp_C4e-433320122174NAC domain-containing protein 19
3swp_D4e-433320122174NAC domain-containing protein 19
4dul_A3e-433320119171NAC domain-containing protein 19
4dul_B3e-433320119171NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8GW08
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g04560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g04560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646514.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK559e-80NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLQ8GW080.0Q8GW08_ORYSJ; Putative development regulation gene OsNAC4 protein
STRINGLOC_Os07g04560.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-73NAC domain containing protein 42