PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g51070.1
Common NameLOC4342116, Os06g0726300, OsJ_22714, OSNPB_060726300, P0017G10.6, P0548E04.26
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 293aa    MW: 32961.4 Da    PI: 8.208
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g51070.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.81.2e-45201512128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk....rknratksgyWkatgkdk 90 
                        pGfrFhPt+eel+ +yLk+ v+gkkl++ ++i++v++y+++P++Lp  ++ +e+ewyfF++rd+k+atg     r++r+t++g+Wkatg+d+
  LOC_Os06g51070.1  20 LPGFRFHPTEEELLEFYLKQVVQGKKLKF-DIIPTVHLYRHDPRELPGLARIGEREWYFFVPRDRKQATGGggggRPSRTTERGFWKATGSDR 111
                       59**************************9.99***************8778899**************7555556****************** PP

               NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ ++   ++l+glkktLv+y+grap+g+ktdWvm+eyrl
  LOC_Os06g51070.1 112 AIRCAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 151
                       ***98777788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-5217178IPR003441NAC domain
PROSITE profilePS5100552.20319178IPR003441NAC domain
PfamPF023652.1E-2421151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEQQRSRSTA AGGEVEVEQL PGFRFHPTEE ELLEFYLKQV VQGKKLKFDI IPTVHLYRHD  60
PRELPGLARI GEREWYFFVP RDRKQATGGG GGGRPSRTTE RGFWKATGSD RAIRCAADPK  120
RLIGLKKTLV YYEGRAPRGT KTDWVMNEYR LPDAAAIPDT MQLQMQHDDM VLCKVYRKAV  180
SLKELEQRVA MEELARSTTS SGTHNTGSPL QQDSSSISIS SSSDAMKKEV VGVDEASAAA  240
HELVRPATLS LPQLEVARPQ SGLEWMQEPF LTQLRSPWME TWSPYYASVL NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-45131789168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.580850.0callus
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5Z7Q4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g51070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g51070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0046850.0AP004685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0017G10.
GenBankAP0036850.0AP003685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0548E04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643570.10.0PREDICTED: NAC transcription factor 29
TrEMBLA0A0E0HVR40.0A0A0E0HVR4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0Q2U60.0A0A0E0Q2U6_ORYRU; Uncharacterized protein
TrEMBLA2YH560.0A2YH56_ORYSI; Putative uncharacterized protein
TrEMBLI1Q5F60.0I1Q5F6_ORYGL; Uncharacterized protein
TrEMBLQ5Z7Q40.0Q5Z7Q4_ORYSJ; Os06g0726300 protein
STRINGBGIOSGA020507-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os06g51070.10.0(Oryza sativa Japonica Group)
STRINGORGLA06G0236900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.17e-79NAC domain containing protein 36