PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g50900.1
Common NameOs06g0724800, OSNPB_060724800, P0535F09.38, P0548E04.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 214aa    MW: 22662.7 Da    PI: 4.8119
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g50900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72e-08158182730
                       HHHHHHHHHHHHHHHHHHCTSCC.C CS
               HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                       ++ErrRR+r+N++++ Lr+++Pk +
  LOC_Os06g50900.1 158 MAERRRRKRLNDRLSMLRSVVPKiS 182
                       79********************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-7148182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.197151213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-6158182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-6158181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MELDEQAFLE ELFSLRRDAW EYNAMGDFFS PACAAMDGFQ ERHQSTTTVS VLPTFTASYE  60
QPPPAPAAGF DCLSEVYGNA AAAFGPNAGG GGGEYGGGGD MGFLDVVEPK ASMVVDGGGL  120
GVCKVEPGLQ AEGGFSAAAA APASKKKRVE GMPSKNLMAE RRRRKRLNDR LSMLRSVVPK  180
ISKVYRVLSE SFCVAIGIAS AREMRLDDVC VCE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145165KKRVEGMPSKNLMAERRRRKR
2159166ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.114090.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329735410.0
Expression AtlasQ5Z988-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g50900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g50900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0072310.0AP007231.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0535F09.
GenBankAP0036850.0AP003685.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0548E04.
GenBankAK0635230.0AK063523.1 Oryza sativa Japonica Group cDNA clone:001-116-H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643717.11e-131PREDICTED: transcription factor bHLH93
TrEMBLQ5Z9881e-155Q5Z988_ORYSJ; Os06g0724800 protein
STRINGLOC_Os06g50900.11e-155(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26361130
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.24e-11beta HLH protein 93