PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g49550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 742aa    MW: 83656.6 Da    PI: 7.8689
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g49550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.73.8e-23102198189
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 
                       +fY++YA ++GF vr++ks++s+r++++++r+fvC++eg++ +++++       + k+rr+r   r gC a+ +v+k++   +w+vtk++ +H
  LOC_Os06g49550.1 102 EFYCAYADRAGFAVRTDKSRRSRRDDSVIMRRFVCTREGFHPTRHDDlteseaaAGKRRRKRLIIREGCMAMCEVTKKEpPLRWVVTKFVAHH 194
                       6******************************************99999999999999999******************99************* PP

              FAR1  86 nHel 89 
                        H++
  LOC_Os06g49550.1 195 VHPV 198
                       **97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-21102198IPR004330FAR1 DNA binding domain
PfamPF105511.4E-26321411IPR018289MULE transposase domain
PROSITE profilePS5096610.299600636IPR007527Zinc finger, SWIM-type
PfamPF044342.2E-6610634IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-4611638IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MGPPCEAQSL LSLFARFLLL PLERIPFPFR STPTPALLHS RRRELRGVGG MEGHRRGEAD  60
DEEEELGLRL GLASAGASAA AAAAGEPPSV GMEFPTSEAA REFYCAYADR AGFAVRTDKS  120
RRSRRDDSVI MRRFVCTREG FHPTRHDDLT ESEAAAGKRR RKRLIIREGC MAMCEVTKKE  180
PPLRWVVTKF VAHHVHPVSL PLCPRPPPAG ESDGLAGEHA AALDEPTQAA TEPSDEPTGA  240
PAAVGNGAPN GGPSFCNRLV RANPAGVRAE VQDLLDYLRK MQAESPGFFY AMQVDSGNCV  300
TNVFWADAKA RMAYKSFGDA VTFDTTYRKT KYMMPFAVFR GINHHLQGII FGCCLLMDET  360
KSSYTWLFDT WLAAMGGRQP DLLVTDQCKA MEAGIARVLP NTRHRFCQRN ILSLCKQKLS  420
AVYIQHINLK ADLRECVFEA ETIEEFQARW DYVIHKYNLE ENTWLQSLYD TRQQWAWVYQ  480
KGSFFPELLK SQRSERLNKF FKTHFNMKTP LLVLISRFDQ VMALSFEKEA QANFVTAYSK  540
PTLKTPSVIE RQAAAIYTRA VFDIFQEEFI ESLGYHADKI EDGVILKYNV ASEEENGRGY  600
IVSFNQLDRK AECTCCKFEY AGILCRHALR IFFMVGVRNL PEEYIMKRWT MDAVSSVVPD  660
ERSLETGVSF PERLVAWYND LSLDGLTYGM RGAMSPEVYK VAKAALQKAF DDVLAAKYQQ  720
MSEHQDMPLP KSQAKRTHTR A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g49550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g49550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0036340.0AP003634.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0655A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641723.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9
TrEMBLB8B2L10.0B8B2L1_ORYSI; Putative uncharacterized protein
STRINGLOC_Os06g49550.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-137FAR1-related sequence 5