PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g48950.1
Common NameARF19, ARF7A, LOC4341978, OJ1215_E11.1, Os06g0702600, P0596H10.43
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 1139aa    MW: 125973 Da    PI: 6.6758
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g48950.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.69.7e-23121222199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   +
  LOC_Os06g48950.1 121 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--R 209
                       99*****************************954.4444.49************************************************..5 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++++l+++++r+
  LOC_Os06g48950.1 210 DEKQQLLLGIRRA 222
                       688889****997 PP

2Auxin_resp1187.8e-39247330183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  LOC_Os06g48950.1 247 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 330
                       79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-43110250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-41113236IPR015300DNA-binding pseudobarrel domain
CDDcd100174.54E-19120212No hitNo description
PfamPF023621.2E-20121222IPR003340B3 DNA binding domain
SMARTSM010191.6E-22121223IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801121223IPR003340B3 DNA binding domain
PfamPF065071.5E-33247330IPR010525Auxin response factor
PfamPF023091.7E-99921079IPR033389AUX/IAA domain
PROSITE profilePS5174526.9389941078IPR000270PB1 domain
SuperFamilySSF542774.41E-710061073No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 1139 aa     Download sequence    Send to blast
MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV  60
SLPPAGSLVV YFPQGHSEQA DPETDEVYAQ MTLQPVTSYG KEALQLSELA LKQARPQTEF  120
FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LQARDLHDNV WTFRHIYRGQ  180
PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH  240
IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQISLGM RFRMMFETEE  300
LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC  360
PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM  420
QQSSSFANTA MQSEYLRSLS NPNMQNLGAA DLSRQLCLQN QLLQQNNIQF NTPKLSQQMQ  480
PVNELAKAGI PLNQLGVSTK PQEQIHDASN LQRQQPSMNH MLPLSQAQTN LGQAQVLVQN  540
QMQQQHASST QGQQPATSQP LLLPQQQQQQ QQQQQQQQQQ QQQQKLLQQQ QQQLLLQQQQ  600
QLSKMPAQLS SLANQQFQLT DQQLQLQLLQ KLQQQQQSLL SQPAVTLAQL PLIQEQQKLL  660
LDMQQQLSNS QTLSQQQMMP QQSTKVPSQN TPLPLPVQQE PQQKLLQKQA MLADTSEAAV  720
PPTTSVNVIS TTGSPLMTTG ATHSVLTEEI PSCSTSPSTA NGNHLLQPIL GRNKHCSMIN  780
TEKVPQSAAP MSVPSSLEAV TATPRMMKDS PKLNHNVKQS VVASKLANAG TGSQNYVNNP  840
PPTDYLETAS SATSVWLSQN DGLLHQNFPM SNFNQPQMFK DAPPDAEIHA ANTSNNALFG  900
INGDGPLGFP IGLGTDDFLS NGIDAAKYEN HISTEIDNSY RIPKDAQQEI SSSMVSQSFG  960
ASDMAFNSID STINDGGFLN RSSWPPAAPL KRMRTFTKVY KRGAVGRSID MSQFSGYDEL  1020
KHALARMFSI EGQLEERQRI GWKLVYKDHE DDILLLGDDP WEEFVGCVKC IRILSPQEVQ  1080
QMSLEGCDLG NNIPPNQACS SSDGGNAWRA RCDQNSEAIL KISMMKSKVE DVRYWNTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1494235146388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.222710.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329885210.0
Expression AtlasQ0D9R7-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g48950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g48950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712960.0AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643493.10.0PREDICTED: auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A0E0Q2A60.0A0A0E0Q2A6_ORYRU; Auxin response factor
STRINGLOC_Os06g48950.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP41931125
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Sato Y, et al.
    Auxin response factor family in rice.
    Genes Genet. Syst., 2001. 76(6): p. 373-80
    [PMID:11922106]
  2. Wang D, et al.
    Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
    Gene, 2007. 394(1-2): p. 13-24
    [PMID:17408882]