PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g48534.1
Common NameOs06g0698900, OSNPB_060698900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 293aa    MW: 31572 Da    PI: 4.6855
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g48534.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.92.1e-16209245135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cg     Tp++Rrgpdg++tLCnaCGl+++ kg+
  LOC_Os06g48534.1 209 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWANKGM 245
                       ****977777***********************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.9E-1173108IPR010399Tify domain
PROSITE profilePS5132014.97573108IPR010399Tify domain
PfamPF062003.1E-1376107IPR010399Tify domain
PROSITE profilePS5101713.404134176IPR010402CCT domain
PfamPF062036.2E-16134176IPR010402CCT domain
SMARTSM004011.5E-11203256IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.091203251IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-13207266No hitNo description
CDDcd002022.56E-14208258No hitNo description
Gene3DG3DSA:3.30.50.108.9E-16208250IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.6E-14209244IPR000679Zinc finger, GATA-type
PROSITE patternPS003440209236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MARFEEEHRA LGAEEEYEEE EDELEEEEEE MEEDEDAQHH EGVGGEVAVP MDAEAAAQLD  60
PHGGMLAASG AVQPMASNQL TLSFQGEVYV FDSVSPDKVQ AVLLLLGGRE LNPGLGSGAS  120
SSAPYSKRLN FPHRVASLMR FREKRKERNF DKKIRYSVRK EVALRMQRNR GQFTSSKPKG  180
DEATSELTAS DGSPNWGSVE GRPPSAAECH HCGINAKATP MMRRGPDGPR TLCNACGLMW  240
ANKGMLRDLS KAPPTPIQVV ASVNDGNGSA AAPTTEQEIP APATVNGHES ST*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.747461e-166flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0X0Y6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g48534.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g48534
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2433340.0AK243334.1 Oryza sativa Japonica Group cDNA, clone: J100058P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641381.10.0PREDICTED: GATA transcription factor 20
SwissprotQ5Z4U50.0GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0P0X0Y60.0A0A0P0X0Y6_ORYSJ; Os06g0698900 protein
STRINGLOC_Os06g48534.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8311661
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-75ZIM-LIKE 2