PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g47590.1
Common NameLOC4341905, Os06g0691100, OSNPB_060691100, P0532H03.9, P0661G04.42
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 189aa    MW: 19923.2 Da    PI: 6.5253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g47590.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-171665255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr ++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++ a+++l+g
  LOC_Os06g47590.1 16 RYRGVRKRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEVAARAYDDAARSLRG 65
                      59*******.7*********83...36*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-101665IPR001471AP2/ERF domain
PROSITE profilePS5103221.4041673IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-201674IPR016177DNA-binding domain
CDDcd000181.27E-181672No hitNo description
SMARTSM003805.4E-341679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-291674IPR001471AP2/ERF domain
PRINTSPR003671.1E-71728IPR001471AP2/ERF domain
PRINTSPR003671.1E-73955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRKSKQPQPQ PSPEIRYRGV RKRPSGRYAA EIRDPAKKTP IWLGTFDSAE VAARAYDDAA  60
RSLRGPTART NFPLAAPSAP PPRPPAAAAA AATSSHSSTV ESWSGGAPRA AASALARSAA  120
PMEATQEEDC HSYCGSSSSV LCEDGSDDAA ASRTPLPFDL NMPPPEEELD MAAVADQMGI  180
RYDTLLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-181779669ATERF1
3gcc_A8e-181779669ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.686982e-95leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ654Y5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g47590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g47590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0054570.0AP005457.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0532H03.
GenBankAP0039350.0AP003935.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0661G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641022.11e-132PREDICTED: ethylene-responsive transcription factor 3
TrEMBLQ654Y51e-132Q654Y5_ORYSJ; Os06g0691100 protein
STRINGLOC_Os06g47590.11e-132(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.18e-20ethylene responsive element binding factor 4