PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g47150.3
Common NameARF10, ARF18, LOC4341882, Os06g0685700, P0009H10.43, P0623A10.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 701aa    MW: 75882.2 Da    PI: 7.574
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g47150.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.4e-24128229199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  +
  LOC_Os06g47150.3 128 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--R 216
                       89****************************996555555..8999*********************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       ++++ l+v+++r+
  LOC_Os06g47150.3 217 TENGDLCVGIRRA 229
                       588999****997 PP

2Auxin_resp112.93.1e-37292375183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       aa+ a ++++FevvY+Prast+eF+vk+  v++a+++++ +GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  LOC_Os06g47150.3 292 AANLAVSGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 375
                       688999****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-37119231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-28124230IPR015300DNA-binding pseudobarrel domain
CDDcd100179.47E-21127228No hitNo description
PROSITE profilePS5086312.999128230IPR003340B3 DNA binding domain
PfamPF023622.4E-22128229IPR003340B3 DNA binding domain
SMARTSM010193.4E-21128230IPR003340B3 DNA binding domain
PfamPF065073.1E-32292375IPR010525Auxin response factor
PROSITE profilePS5174524.401614697IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MITFVDSAAK ERERESDKCL DPQLWHACAG GMVQMPPVSS KVYYFPQGHA EHAQGHGPVE  60
FPGGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAGDADD GIGAAAAAAA  120
QEEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPRLDYS ADPPVQTVLA KDVHGVVWKF  180
RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFMRTENG DLCVGIRRAK KGGVGGPEFL  240
PPPPPPPPTP AAGGNYGGFS MFLRGDDDGN KMAAAARGKV RARVRPEEVV EAANLAVSGQ  300
PFEVVYYPRA STPEFCVKAG AVRAAMRTQW FAGMRFKMAF ETEDSSRISW FMGTVSAVQV  360
ADPIRWPNSP WRLLQVSWDE PDLLQNVKRV SPWLVELVSN MPAIHLAPFS PPRKKLCVPL  420
YPELPIDGQF PTPMFHGNPL ARGVGPMCYF PDGTPAGIQG ARHAQFGISL SDLHLNKLQS  480
SLSPHGLHQL DHGMQPRIAA GLIIGHPAAR DDISCLLTIG SPQNNKKSDG KKAPAQLMLF  540
GKPILTEQQI SLGDAASVDV KKSSSDGNAE NTVNKSNSDV SSPRSNQNGT TDNLSCGGVP  600
LCQDNKVLDV GLETGHCKVF MQSEDVGRTL DLSVVGSYEE LYRRLADMFG IEKAELMSHV  660
FYRDAAGALK HTGDEPFSEF TKTARRLNIL TDTSGDNLAR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-782039651388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.227350.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329855310.0
Expression AtlasQ653H7-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g47150.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g47150
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1003220.0AK100322.1 Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644138.10.0PREDICTED: auxin response factor 18
RefseqXP_015644137.10.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0E0Q1T70.0A0A0E0Q1T7_ORYRU; Auxin response factor
STRINGLOC_Os06g47150.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Sato Y, et al.
    Auxin response factor family in rice.
    Genes Genet. Syst., 2001. 76(6): p. 373-80
    [PMID:11922106]
  2. Wang D, et al.
    Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
    Gene, 2007. 394(1-2): p. 13-24
    [PMID:17408882]