PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g46410.1
Common NameARF17, B1153E06.26, LOC4341841, Os06g0677800, P0710B08.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ARF
Protein Properties Length: 918aa    MW: 101782 Da    PI: 6.2107
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g46410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.6e-24134235199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  LOC_Os06g46410.1 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 222
                       99*****************************86555544..8************************************************..7 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  LOC_Os06g46410.1 223 NDNNQLLLGIRRA 235
                       777778***9997 PP

2Auxin_resp1187.6e-39260343183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld  rWpnS+Wrs+k
  LOC_Os06g46410.1 260 AAHAASTNSRFTIFYNPRASPSEFVIPLSKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVK 343
                       79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.49E-48119263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-43125249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-22133234No hitNo description
PfamPF023628.3E-23134235IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239134236IPR003340B3 DNA binding domain
SMARTSM010191.8E-25134236IPR003340B3 DNA binding domain
PfamPF065074.3E-34260343IPR010525Auxin response factor
SuperFamilySSF542772.22E-7783862No hitNo description
PfamPF023092.5E-8783871IPR033389AUX/IAA domain
PROSITE profilePS5174523.1786870IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MRLSSSSGSV LPAQAASPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV  60
AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PQELKDPYLP  120
AELGSANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELIAKDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFVSAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLSKY VKAVYHTRIS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD AARWPNSHWR SVKVGWDEST AGERQPRVSL  360
WEIEPLTTFP MYPSPFPLRL KRPWPTGLPS LHGGKDDDLT SSLMWLRDSA NPGFQSLNFG  420
GLGMNPWMQP RFDASLLGLQ PDMYQTIAAT AFQDPTKQVS PTILQFQQPQ NIGGRANTLL  480
PSQILQQVQP QFQQQQYLQN INETTIQGHA QSEFLQQQLQ RCQSFTEQKP QLQTQQQQQE  540
SQQQQQQQSQ CMQVPQHQQM QQQKNMTNYQ SVPNALSPFS QLSSPSQSSP MTLQTVLPFS  600
QPQSYPDTSM SSLSPSNTST MHNALRPFSS EAPSHLSMPR PTAVPVPDPW SSKRVAVESL  660
LPSRPQVTSQ MEQLDSTAPS IPQSSALAPL PGRGCLVDQD GNSDPQNHLL FGVNIDSQSL  720
LMQGGIPSLQ GENDSTAIPY STSNFLSPSQ NDFPLDQTLS SADCLDESGY VPCSQNSDQV  780
INRPPATFVK VYKSGTYGRS LDITRFSSYH ELRRELGRLF GLEGQLENPL RSGWQLVFVD  840
REDDVLLVGD DPWQEFVNSV SCIKILSPQE VQQMGKPFEL LSSAPGKRLG SSCDDYVSRQ  900
ESRSLSTGIA SVGSVEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602736451388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.981260.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329884890.0
Expression AtlasQ653U3-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g46410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g46410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032800.0AK103280.1 Oryza sativa Japonica Group cDNA clone:J033124L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643843.10.0PREDICTED: auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A0E0Q1M20.0A0A0E0Q1M2_ORYRU; Auxin response factor
TrEMBLA0A0E0AD970.0A0A0E0AD97_9ORYZ; Auxin response factor
STRINGLOC_Os06g46410.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8561456
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa).
    Gene, 2007. 394(1-2): p. 13-24
    [PMID:17408882]