PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g44010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 397aa    MW: 42643.2 Da    PI: 9.836
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g44010.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.85.9e-30250309159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ k++++pr+Y+rC++a  Cpvkkkv+rsa+d++v++ tYegeHnh 
  LOC_Os06g44010.1 250 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSADDNTVLVATYEGEHNHA 309
                       58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.199245311IPR003657WRKY domain
SuperFamilySSF1182901.29E-25249311IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-29249311IPR003657WRKY domain
SMARTSM007743.2E-35250310IPR003657WRKY domain
PfamPF031065.4E-25251308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0031347Biological Processregulation of defense response
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAKMLPPPSQ SVPSRPPSWL YIPPRRRHGT FTSSCAFRLS PSSPSSPPPP VLDFQYIQFM  60
DSWIEQTSLS LDLNVGLPST ARRSSAPAAP IKVLVEENFL SFKKDHEVEA LEAELRRASE  120
ENKKLTEMLR AVVAKYTELQ GQVNDMMSAA AAAAVNAGNH QSSTSEGGSV SPSRKRIRSV  180
DSLDDAAHHR KPSPPFVAAA AAAAYASPDQ MECTSAAAAA AAKRVVREDC KPKVSKRFVH  240
ADPSDLSLVV KDGYQWRKYG QKVTKDNPCP RAYFRCSFAP ACPVKKKVQR SADDNTVLVA  300
TYEGEHNHAQ PPHHDAGSKT AAAAKHSQHQ PPPSAAAAVV RQQQEQAAAA GPSTEVAARK  360
NLAEQMAATL TRDPGFKAAL VTALSGRILE LSPTKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-212493121375WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.500150.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329914910.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00068PBMTransfer from AT2G25000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g44010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g44010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1062820.0AK106282.1 Oryza sativa Japonica Group cDNA clone:002-101-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641578.10.0PREDICTED: probable WRKY transcription factor 60
TrEMBLA0A0E0Q0V30.0A0A0E0Q0V3_ORYRU; Uncharacterized protein
STRINGLOC_Os06g44010.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25000.15e-46WRKY DNA-binding protein 60