PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g42990.1
Common NameOs06g0636000, OSJNBa0019I19.46, OSNPB_060636000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 393aa    MW: 40886.2 Da    PI: 9.4028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g42990.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.96e-14103155255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G r ++ +g+++AeIr     +   ++ r++lg+fgtaeeAa a++ a+  ++g
  LOC_Os06g42990.1 103 KYRGARKRP-WGKYAAEIRIR---NtmgVKERVWLGTFGTAEEAAWAYDTAATVIHG 155
                       8********.**********5...445588*********************977765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-24102164IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-17103163IPR016177DNA-binding domain
PfamPF008472.3E-8103151IPR001471AP2/ERF domain
CDDcd000185.27E-23103163No hitNo description
SMARTSM003801.8E-24103169IPR001471AP2/ERF domain
PROSITE profilePS5103220.495103163IPR001471AP2/ERF domain
PRINTSPR003672.5E-9104115IPR001471AP2/ERF domain
PRINTSPR003672.5E-9129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGRPVKQKTT TWLVELLREY CQRAAAQATA GNGAVAAAAA VEGEINTDGL AALAVEAEGF  60
AAANGEGWVA PAVEGEGEGF VGAPVVEGEE GLTAELLVAA ERKYRGARKR PWGKYAAEIR  120
IRNTMGVKER VWLGTFGTAE EAAWAYDTAA TVIHGDKATT NFPRAPLRPA TTPVMRSMLV  180
FFGIAHLVRS LVPRARGPRG RGGGARGRGR SRRRRAAAAA APSAPASEAP PPPPPSSALV  240
PEPELQVQGG RGERGRGRGR GRGGGRGGRR GRGRTPARVV AEDSPMLQAT TPAAAPAPAP  300
ALAPAPANQA IFQPMIIPPG GVVVAPDDFL LSAISDDEPV LPHKKPKLLG VYTPPDSPDQ  360
FVMEFFADLG DGDDILSSSF WQDPAGDGED TQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-14102163463ATERF1
2gcc_A2e-14102163463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257266RGRGRGGGRG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ67V18
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g42990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g42990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0053860.0AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0Q0J70.0A0A0E0Q0J7_ORYRU; Uncharacterized protein
TrEMBLQ67V180.0Q67V18_ORYSJ; Os06g0636000 protein
STRINGLOC_Os06g42990.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP1823699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.19e-13ERF family protein