PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g42520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 999aa    MW: 112818 Da    PI: 8.3423
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g42520.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.64.8e-19240319290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       fYn YA+ +GF +r+sk++++ + g   +++f+C +eg++++ +          + tr+gCka++++++++ ++kw+v+ +++eHnHe+ 
  LOC_Os06g42520.1 240 FYNLYARFTGFGIRRSKNRYK-DGGVKSMQEFCCIREGRDNSVT---------GPPTRIGCKAMVRLNRSSeSQKWRVSAFVSEHNHEMK 319
                       9***************99987.889999**********988754.........569**************99***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-13240318IPR004330FAR1 DNA binding domain
PfamPF105511.4E-30442535IPR018289MULE transposase domain
PROSITE profilePS5096610.237725761IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-5726757IPR007527Zinc finger, SWIM-type
SMARTSM005755.4E-5736763IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MATARVVFLL LFLVQIVGVL AAAARPLEEN GVDGIATQML AAEAYILLPG VATPIVTIGH  60
LSNSHQGFGL QLTNGLFLME QKLSGGKGRM SSARSVASPS AARVGGGSSA PDVEQQKSVA  120
AVGASSPVSS SKHHHMAKAE DGTITVNGDK QQNPAADRGS YQNPCWTETI FAKIAMEEEG  180
WPEKGGEDHS GQPMDVVPLE RIVVEGEEDS DLLPISLSDP AILLPKIGQT FNEDSDGYAF  240
YNLYARFTGF GIRRSKNRYK DGGVKSMQEF CCIREGRDNS VTGPPTRIGC KAMVRLNRSS  300
ESQKWRVSAF VSEHNHEMKR DLQHTKHFRS HNFIDEGTKR NIKEMVDNGM TPTAMYGLLS  360
GMHGGPSLTP FTRRAVTRMA YAIRRDECSN DVQKTLNFFR EMQCRSKNFF YTIQIDGASR  420
IKNIFWCHSL SRLSFDHFGD AITFDTTYQT NRYNMPFGIF VGVNNHFQTA IFGCALLREE  480
TIEAFKWLFQ TFTDAMHGKR PVAILTDNCH QMEVAIKAVW PETIHRVCKW HVLKNAKENL  540
GNIYSKRSSF KQEFHRVLNE PQTEAEFEKA WSDLMEQYNL ESSVYLRRMW DMKKKWAPAY  600
FREFFFARMS TTQRSESMNH VLKKYVKPSS SLHGFAKRYE NFYNDRIEAE DAEEHDTYNE  660
KVSTLTSSPI EKHASRVYTR GAFSRFKEQF KLSFSFMVYH TSDQHVLQLV HIGDDTLQSW  720
GSKEFKVQVD LTEQDLSCGC KLFEHLGIIC SHIIRVMVQY GFTEIPKKYI LKRWTKDARD  780
SIPKHLEESY LKDKEAASSR TYRNTLLHKS ALDMVRLGGT SSETYEKTVE VLTKLIGELQ  840
VMCTSQVVNN KEIHYGDRTI GKKPTGVQLD DSVDSSDSEH GMSDEFCVAD EDGIGQDVSA  900
GEDSVDVDMT DVNEEDILPP EVRRSRGRPR STRLMSKGET SSKAKKKKAS ESTSKDESKN  960
HAKGKKESTK QIRYCKQCGG HGHYKSTCGR KSSYERKK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.123040.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g42520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g42520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0072050.0AP007205.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0048L03.
GenBankAP0047920.0AP004792.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0505A04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ8H7R40.0Q8H7R4_ORYSJ; Putative uncharacterized protein
STRINGLOC_Os06g42520.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-117FAR1-related sequence 5