PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g42140.1
Common NameOs06g0626801, OSJNBa0072A21.36, OSNPB_060626801, P0530H05.7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 72aa    MW: 7897.05 Da    PI: 11.6905
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g42140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.55.2e-072562444
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                       +r++ + +NRe+A   R RK+  ++ L+  v+ L  eN  
  LOC_Os06g42140.1 25 KRRAKMMLSNRESA---RMRKQRHLDDLTAQVAHLHRENVH 62
                      57889999******...79********************75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579591.16E-62666No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-52662No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MSAARGGGRA SSSAVEEELR ALMEKRRAKM MLSNRESARM RKQRHLDDLT AQVAHLHREN  60
VHVATALGLT T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.214428e-53callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329809108e-53
Expression AtlasQ67VR4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g42140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g42140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149621e-117AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0047371e-117AP004737.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0072A21.
GenBankAP0035411e-117AP003541.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0530H05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689573.12e-28PREDICTED: ocs element-binding factor 1-like
TrEMBLQ67VR43e-43Q67VR4_ORYSJ; Os06g0626801 protein
STRINGLOC_Os06g42140.19e-43(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1070849
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.16e-16G-box binding factor 6