PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g40150.1
Common NameLOC4341466, Os06g0604000, OsJ_21903, OSNPB_060604000, P0486H12.41-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 244aa    MW: 25396.5 Da    PI: 10.0322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g40150.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-19655154
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                      ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  + 
  LOC_Os06g40150.1  6 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAILMS 55
                      59*******9.**********8.....334*********************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.02E-32666No hitNo description
PROSITE profilePS5103221.957764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-33765IPR001471AP2/ERF domain
SMARTSM003803.5E-39770IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-20765IPR016177DNA-binding domain
PfamPF008473.5E-12754IPR001471AP2/ERF domain
PRINTSPR003671.6E-10819IPR001471AP2/ERF domain
PRINTSPR003671.6E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGQSKKKFRG VRQRHWGSWV SEIRHPLLKR RVWLGTFETA EEAARAYDEA AILMSGRNAK  60
TNFPVARNAT GELTPAAAVA GRDGRVGGGS GSSSSMTANG GGNSLSQILS AKLRKCCKTP  120
SPSLTCLRLD PEKSHIGVWQ KRAGARADSS WVMTVELNKD TAVSSAATVA AATAVSSSDQ  180
PTPSDSTVTT TSTSTTGSPS PPPPAMDDEE RIALQMIEEL LGRSGPGSPS HGLLHGGEGS  240
LVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A4e-16668467ATERF1
2gcc_A4e-16668467ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.85840.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329711810.0
Expression AtlasQ69XI7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g40150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g40150
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402220.0FJ940222.1 Oryza sativa Japonica Group clone KCS272E11 AP domain containing transcription factor mRNA, complete cds.
GenBankAK0611630.0AK061163.1 Oryza sativa Japonica Group cDNA clone:006-209-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641433.11e-177PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ9XI333e-74WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0E0PZW71e-177A0A0E0PZW7_ORYRU; Uncharacterized protein
TrEMBLQ69XI71e-177Q69XI7_ORYSJ; AP domain containing transcription factor
STRINGLOC_Os06g40150.11e-176(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP37173876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.12e-55ERF family protein