PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g39960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 184aa    MW: 19477.1 Da    PI: 10.6485
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g39960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.58e-15103163161
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                       +ke +r +r+ +NR++A+  R+RKka++ eLe +vk Le  N++L ++l++l++e + l++
  LOC_Os06g39960.1 103 DKEHRRLKRLLRNRVSAQQARERKKAYMSELEARVKDLERSNSELEERLSTLQNENQMLRQ 163
                       58899***************************************************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.3E-16103167IPR004827Basic-leucine zipper domain
PfamPF001707.7E-14104163IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.702105168IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-17107167No hitNo description
SuperFamilySSF579592.63E-13107165No hitNo description
PROSITE patternPS000360110125IPR004827Basic-leucine zipper domain
CDDcd147042.27E-14117159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MQRDHRRSSP PAAASSSERS SDSAPNTDDG KEGVDSDDEE IVGRVPEFGL ALPGTSTSGR  60
GSVRVAGDAA ATAAGTSSSS PAAQAGVAGS SSSGRRRGRS PADKEHRRLK RLLRNRVSAQ  120
QARERKKAYM SELEARVKDL ERSNSELEER LSTLQNENQM LRQVLKNTTA NRRGPDSSAG  180
GDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A1e-16128167342Transcription factor HY5
2oqq_B1e-16128167342Transcription factor HY5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1010260.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g39960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g39960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2415580.0AK241558.1 Oryza sativa Japonica Group cDNA, clone: J065178J16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641260.11e-126PREDICTED: transcription factor HY5 isoform X1
SwissprotO246467e-51HY5_ARATH; Transcription factor HY5
TrEMBLA0A0D3GIE81e-102A0A0D3GIE8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0ABJ61e-102A0A0E0ABJ6_9ORYZ; Uncharacterized protein
STRINGLOC_Os06g39960.11e-125(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20811737
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.19e-32bZIP family protein