PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g36480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 568aa    MW: 61990.6 Da    PI: 7.6262
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g36480.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.68.9e-31542301128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                       lp+G++F+Ptd+el+ e+L++kv+          ++++   i+   +i++++P++Lp  v+++  + +fF++ +k+y+tg+rk+r+       
  LOC_Os06g36480.1  54 LPAGVKFDPTDQELI-EHLEAKVRPGGeaaahplIDEFIPtIEGEdGICYTHPEKLP-GVSKDGLSRHFFHRPSKAYTTGTRKRRKiqppaaa 144
                       799************.99*****988856665543333333766646**********.556667799******************88****** PP

               NAM  78 ..................................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                                          ++ +W++tgk+++v+  +g++ g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  LOC_Os06g36480.1 145 assgggggnasssssasaaaavarhghqqqqqqqRSETRWHKTGKTRAVVG-GGRQRGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 230
                       *****************************9998755789***********9.99************5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-3548138IPR003441NAC domain
PROSITE profilePS5100526.38454249IPR003441NAC domain
PfamPF023651.3E-1455230IPR003441NAC domain
SuperFamilySSF1019414.32E-35184249IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDGVVAEDQA GGSGSGHRRL IGSRIEEHRK YMSEESCCPR CGHKIDRKLD WVGLPAGVKF  60
DPTDQELIEH LEAKVRPGGE AAAHPLIDEF IPTIEGEDGI CYTHPEKLPG VSKDGLSRHF  120
FHRPSKAYTT GTRKRRKIQP PAAAASSGGG GGNASSSSSA SAAAAVARHG HQQQQQQQRS  180
ETRWHKTGKT RAVVGGGRQR GCKKILVLYT NFGKHRKPEK TNWVMHQYHL GEAEEERDGE  240
LVVSKIFYQT QPRQCAAADA AATASASAVD RRTTSLRDRA AAAAAAAAAA APMASANVSV  300
AAFHGGAAGI DEFSFAQFRS SFEEAGMGAS SSDHQSAMVD QRRRQQQHDD DEHDHRRGGG  360
GHHYVGQQQS VAATFHVVSS PADPIARLMS PPPAHQGTVM LRQPEPPYIY HHQEDERPHQ  420
PRKFDGRSTS GSGLEEVIMG CTSRRSKGGE TSGGKDGTEW QYPSFWPSDS QDHHGDKDDI  480
EAKQKGETEK EKGEEKQSFS RYTFAKKYSM NKETLKISSI LHSGILSESK LPENFPVCVV  540
EGEYDEHGNA WMNLILPFSD SSKLRLM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.842710.0callus| flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g36480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g36480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0037130.0AP003713.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0528E12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641895.10.0PREDICTED: uncharacterized protein LOC9268992 isoform X2
TrEMBLB8B3S00.0B8B3S0_ORYSI; Putative uncharacterized protein
STRINGLOC_Os06g36480.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-100NAC domain containing protein 75