PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g36000.1
Common NameP0427B07.36
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 266aa    MW: 27366.6 Da    PI: 4.5754
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g36000.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.4e-185298252
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                       y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  LOC_Os06g36000.1 52 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 98
                      69****998.**********843...6*********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.5E-3352115IPR001471AP2/ERF domain
PROSITE profilePS5103222.99852109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-3152109IPR001471AP2/ERF domain
PfamPF008472.7E-125298IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2152109IPR016177DNA-binding domain
CDDcd000181.28E-1853109No hitNo description
PRINTSPR003673.8E-105364IPR001471AP2/ERF domain
PRINTSPR003673.8E-107591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MPMPEYELAA CSPASPSSSA SSTSTPPSPG GEAAARCGEK RGRGGGGGRH PTYRGVRMRA  60
WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDAAALVVK GPAAVLNFPG AAASLPRPAS  120
AAPRDVQAAA ARAAAMALDA VVPAPPSPPP PLMPPQASPS EAARAHALVA QVDQDDDDEE  180
LEEIVELPPI DELDAAAELV FASSGATTFH YDPAADQPWY DQPAACLQDG GGGGIAVHDA  240
LGFELDHVWA DGVVASGFGA LLWNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A7e-1548109363ATERF1
2gcc_A7e-1548109363ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ5Z9C9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g36000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g36000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0036820.0AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ5Z9C90.0Q5Z9C9_ORYSJ; Putative Ap21
STRINGLOC_Os06g36000.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP2717333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-27ERF family protein