PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g30830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 242aa    MW: 25711.1 Da    PI: 9.2161
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g30830.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.32.3e-192066349
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      i+ k +rqvtfskRr g++KKA+E+S+L +a +a++ fs+ g+++ +
  LOC_Os06g30830.1 20 IDGKEKRQVTFSKRRRGLFKKASEISTLSGASIAIVSFSKAGNVFAF 66
                      78899**************************************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.7961070IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-221080IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-221069IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-151232IPR002100Transcription factor, MADS-box
PfamPF003193.2E-192066IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-153247IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-154768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRPRGGTSK GKQKIEMCCI DGKEKRQVTF SKRRRGLFKK ASEISTLSGA SIAIVSFSKA  60
GNVFAFGSPS VDAVLRRHVV AGPSTSTSHA HAGGDVFADD GGDNPEVLNA LKRATDEAAA  120
EVAAEDARQS GVEGKITEAM AAGRRRFWWD AANVEALGEA ELPVFERALH KLRGAVAQGG  180
NNPIQERWDR IPAQGSPGGS YGWEDLSPTG KLYNQPPFAY RLPVMQSIVS DQLGVVCAML  240
L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.867942e-59flower| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g30830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g30830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0039510.0AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642715.11e-124PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A0E0PYD71e-178A0A0E0PYD7_ORYRU; Uncharacterized protein
STRINGLOC_Os06g30830.11e-178(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
MonocotsOGMP2047878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-22AGAMOUS-like 62