PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g30090.1
Common NameB1089G05.30, LOC107276693, Os06g0496400, OsJ_21438, OSNPB_060496400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 295aa    MW: 30898.2 Da    PI: 5.4958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g30090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-08199245455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + + + + RR+ri +++  L+el+P+      +K++ +++L +A+ Y+k +q
  LOC_Os06g30090.1 199 TQSSAAKSRRERISERLRALQELVPSG-----GKVDMVTMLDRAISYVKFMQ 245
                       56677899*****************98.....8****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.81E-11193249No hitNo description
Gene3DG3DSA:4.10.280.103.4E-12193253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-13194255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.526195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5199245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-9201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAMVAGDEAM SVPWHDVGVV VDPEAAGTAP FDAGAGYVPS YGQCQYYYYY DDHHHHPCST  60
ELIHAGDAGS AVAVAYDGVD GWVHAAAAAT SPSSSSALTF DGHGAEEHSA VSWMDMDMDA  120
HGAAPPLIGY GPTAATSSPS SCFSSGGSGD SGMVMVTTTT PRSAAASGSQ RRARPPPSPL  180
QGSELHEYSK KQRANNKETQ SSAAKSRRER ISERLRALQE LVPSGGKVDM VTMLDRAISY  240
VKFMQMQLRV LETDAFWPAS DGATPDISRV KDALDAIILS SSSPSQKASP PRSG*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ651K2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g30090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g30090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8362780.0CT836278.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642667.10.0PREDICTED: transcription factor SPATULA-like
TrEMBLQ651K20.0Q651K2_ORYSJ; BHLH protein-like
STRINGLOC_Os06g30090.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP35321326
MonocotsOGMP1880188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.19e-36ROOT HAIR DEFECTIVE6