PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g29020.1
Common NameLOC4341065, OJ1568_D07.5-1, Os06g0485100, OSNPB_060485100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 371aa    MW: 40975 Da    PI: 7.2988
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g29020.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.65e-091375656
                      S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
          Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                      +ft+ ++ e+e+  ++  n  p ++ ++ LA+k            ++ +qV +WFqNrR+ ++
  LOC_Os06g29020.1 13 RFTQAEVAEMEARLQQlnNAIPHRSVIQALADKFtssparsgkvAVQPKQVWNWFQNRRYSHR 75
                      69*************776999***************************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0056781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.7E-81280IPR009057Homeodomain-like
SuperFamilySSF466896.84E-111278IPR009057Homeodomain-like
PfamPF000461.9E-61375IPR001356Homeobox domain
PROSITE profilePS5007110.1391377IPR001356Homeobox domain
PfamPF167195.7E-41126253IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGRPPSTGGP AFRFTQAEVA EMEARLQQLN NAIPHRSVIQ ALADKFTSSP ARSGKVAVQP  60
KQVWNWFQNR RYSHRSRSSR GPPTLMQTKM LPTGSDEHKS PPFRAMPSAS AHSGSPSGKG  120
SLESGQVEFE AKSARDGAWY DVAAFLSHRL FESGDPEVRV RFSGFGAEED EWINVRKCVR  180
QRSLPCESTE CVAVLPGDLI LCFQEGKEQA LYFDACVLDA QRRRHDVRGC RCRFLVRYDH  240
DHSEEIVPLR KVCRRPETDY RLQILHAARA AGMAKEAVVD LVSHNDKSSA EQKPPKQHKM  300
MDVNTDEVTM VSNQDQEEPT GKPAATLPAA PVKTLNDSAS ASASDVQMGE AQAAPKVESS  360
DEVEDKMKEG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuv_A1e-461242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-461242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-461242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-461242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-461242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_A1e-461242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-461242571134SHH1 SAWADEE
4iur_B1e-461242571134SHH1 SAWADEE
4iuq_A1e-461242571134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-461242571134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.180950.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329785770.0
Expression AtlasQ67W46-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g29020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g29020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1042820.0AK104282.1 Oryza sativa Japonica Group cDNA clone:001-006-D08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644221.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-128SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLQ67W460.0Q67W46_ORYSJ; Os06g0485100 protein
STRINGLOC_Os06g29020.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16411419
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-105sequence-specific DNA binding transcription factors;sequence-specific DNA binding