PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g19980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 640aa    MW: 73286.6 Da    PI: 9.4497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g19980.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-07424464346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +WT+eE e++ + v++ G+  W + a+++g  +++ ++k+ w+ 
  LOC_Os06g19980.1 424 KWTPEEYEKIRRHVEKNGTS-WISLAQELG--KSEIHLKDTWRR 464
                       8*****************99.********8..9*******9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2348419IPR001005SANT/Myb domain
PROSITE profilePS500903.95351417IPR017877Myb-like domain
SuperFamilySSF466891.2E-6397471IPR009057Homeodomain-like
SMARTSM007170.51421468IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-6423471IPR009057Homeodomain-like
PROSITE profilePS500906.806424466IPR017877Myb-like domain
PfamPF139211.3E-5425468No hitNo description
SMARTSM0071721486552IPR001005SANT/Myb domain
PROSITE profilePS500906.574487550IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-5489569IPR009057Homeodomain-like
SuperFamilySSF466891.64E-6530607IPR009057Homeodomain-like
PROSITE profilePS500907.898552605IPR017877Myb-like domain
SMARTSM0071719556607IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MGGEGAERRS KKKEKGKRQE EKAESGSRGD GEAVKLDLAT DFPSNSMGKV AMDVEEAKEV  60
HRRKKRKEKE KDHGKEKKNK VIADNIEEAC AEAEQAEASG LKVEQHCSEH VQGDMSKCGS  120
EEDKSIKKDN KLMKKKKKKE RKVEMAEEGQ ILAGSTDENA GLLHAEMGRG EKEQGKKSKK  180
SKRKHEDGEP VADGSAGDEI MTNRDKKRRR KEHSVELKEG DQVNISKKAV KIKGNKKRKN  240
ESDKFNPDLS TDALTGEDKV GGDGKNDKRK KKNDTSTRRN EVGRDDKNDK KKKKSKERNG  300
GRKGEKEKAA QSKDKVRRVS FSDAVEVFSI NDGEDEDNGK SAESEVVHGK RFTPEENATL  360
MEAIMSYIEM KQLGENGLEM IRACSKHPEL KGCWAEIGKS LPHRPLTAIY KRARILLYRS  420
DERKWTPEEY EKIRRHVEKN GTSWISLAQE LGKSEIHLKD TWRRIKPKNL KSVARFCISI  480
KWKDSLQSQW TQDEYQNLFD LVNLDLRVKA HQEYDAGNRK LRDNIAWEAI SDKLTTRNHK  540
NCCLKWYYQL ASPLVQKGIW ADTDDYRLVE ALQNVDAVCV EDIDWDNLLD HRSGEVCRQR  600
WNEMVRYLGG HKEKPFIEQV EVLSKRYCPE MVDYREGEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16267RKKRKE
26268RKKRKEK
3133141KKKKKKERK
4205210KKRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.180710.0callus| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g19980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g19980
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0061660.0AP006166.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1435D02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643783.10.0PREDICTED: RNA polymerase I termination factor isoform X1
TrEMBLA0A0E0PWS90.0A0A0E0PWS9_ORYRU; Uncharacterized protein
STRINGLOC_Os06g19980.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP53221418
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.19e-95MYB_related family protein