PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g19444.2
Common NameLOC4340812, Os06g0298200, OSNPB_060298200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CO-like
Protein Properties Length: 408aa    MW: 43807.7 Da    PI: 4.8779
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g19444.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.1e-07445540
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       C+ ++e++   +C+++   lC +C  + H+       Ht++
  LOC_Os06g19444.2  4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                      6*****************************657888889876 PP

2zf-B_box24.36.5e-084789541
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                       C+++ ++++   C   +  lC++C  ++H+       H++++
  LOC_Os06g19444.2 47 LCDRCASQPAMVRCLVENASLCQNCDWNGHSAgssaagHKRQT 89
                      7*****************************6688899999876 PP

3CCT64.92.4e-22350393144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  LOC_Os06g19444.2 350 RDDAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393
                       899**************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
CDDcd000215.12E-8447No hitNo description
PROSITE profilePS501198.8594390IPR000315B-box-type zinc finger
PfamPF006432.5E-54790IPR000315B-box-type zinc finger
CDDcd000217.04E-64790No hitNo description
SMARTSM003360.274890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.388350392IPR010402CCT domain
PfamPF062033.8E-17350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LVENASLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS ELSKIWTFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSNQDN AAGDSSLLDI ASATLMSDLG TAGKPKSLIG SSSEAGVNLL  180
PLATDQMAGS VDSTSAKVPY TADQDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE  240
QLFDDAGIDS YFESKEIPSG NSDEPKLMQP VTSNAVSADS GMSIPGAKGD SSLCIPVRQA  300
RSSISLSFSG LTGESSAGDY QDCGVSPVLL MGEPPWHPPG PEGSFAGATR DDAITRYKEK  360
KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LCETRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KKKRR
2359364KKKRRK
3360364KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.129770.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0DCR8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g19444.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g19444
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8588020.0HQ858802.1 Oryza sativa Indica Group isolate UT1180 C2C2-CO-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644313.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9 isoform X2
SwissprotQ9SSE51e-129COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLF1DK440.0F1DK44_ORYSI; C2C2-CO-like transcription factor (Fragment)
TrEMBLQ0DCR80.0Q0DCR8_ORYSJ; Os06g0298200 protein
STRINGLOC_Os06g19444.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.14e-95B-box type zinc finger protein with CCT domain