PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g16400.1
Common NameOsJ_20959
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 438aa    MW: 47089.4 Da    PI: 6.3661
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g16400.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09269317355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  LOC_Os06g16400.1 269 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 317
                       58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-17264334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-10264321No hitNo description
PROSITE profilePS5088815.516266316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-17267331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6269317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MNEKDATDLE ERSEASEHGQ ALSFHGGAMF LQEAQIASPA AANNALTSMA NPFPIPPGLW  60
NPPSHNMGLG ETSFSSLLGM LSAGAPPPFV ATPGFVDSTA GFPCYNGGNL GAMINHPFPG  120
IHQPLGDFQN GVEPCREIED IEIEGSKNVS QTGEKQQGDG ETTHAVDSSS KELSMPGRNG  180
GAGHDEGTRV SCSKKRKRSG QDGGVKHAEG GEQLATVGSA QKNEDDEKGE PKRSSVASGK  240
SSGKQIKDNA GSPKEDYIHV RARRGQATNS HSLAERVRRE KISERMKYLQ DLVPGCSKVT  300
GKAVMLDEII NYVQSLQRQV EFLSMKLASV NPTLDFNIER ILSKDIFQCR GTTASSAFGF  360
FPDIVHPRLH PPKYTQVGMP SIVNPTDAFG RVIHAPLGTN SAFKEPKHQM PNNLNGEFQD  420
VIEMPFTHDH HGSNDQP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198KKRKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.325260.0callus| flower| leaf| panicle| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329890620.0
Expression AtlasB9FSQ6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g16400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g16400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1038530.0AK103853.1 Oryza sativa Japonica Group cDNA clone:J033148M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643534.10.0PREDICTED: transcription factor bHLH49 isoform X2
RefseqXP_015643533.10.0PREDICTED: transcription factor bHLH49 isoform X2
TrEMBLB9FSQ60.0B9FSQ6_ORYSJ; Uncharacterized protein
STRINGLOC_Os06g16400.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-71bHLH family protein