PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g14710.1
Common NameLOC107275396, Os06g0258500, OsJ_20873, OSNPB_060258500, P0603C10.31
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 143aa    MW: 16352.7 Da    PI: 11.7075
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g14710.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.4e-153785348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                      +WT+e+d  l ++  ++G+++W+++a+ m+    +R++ qc++rw+++l
  LOC_Os06g14710.1 37 AWTPELDAVLERLAMEHGSRHWRRVAAQMPrhsSRRSPAQCRDRWRDHL 85
                      7*********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.7383089IPR017930Myb domain
SMARTSM007171.9E-83487IPR001005SANT/Myb domain
PfamPF002495.9E-143785IPR001005SANT/Myb domain
CDDcd001679.86E-93785No hitNo description
Gene3DG3DSA:1.10.10.603.7E-1637102IPR009057Homeodomain-like
SuperFamilySSF466892.74E-1637108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDMELSSSSS AASVFASSSA TSPPLGRCVV RIRLPPAWTP ELDAVLERLA MEHGSRHWRR  60
VAAQMPRHSS RRSPAQCRDR WRDHLARDVF HRPFTADDDA ELALLCLRLD DGRSSRAVKR  120
RWRELRKSDA FLGKLWRRPL SH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A1e-12291221103MYB21
3osf_D1e-12291221103MYB21
3osg_A1e-12291221103MYB21
3osg_D1e-12291221103MYB21
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120RAVKRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ652S6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g14710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g14710
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0055270.0AP005527.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0603C10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642267.15e-96PREDICTED: transcription factor MYB44-like
TrEMBLQ652S65e-96Q652S6_ORYSJ; Myb-like transcription factor-like
STRINGLOC_Os06g14710.11e-95(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10428310
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.14e-09myb domain protein 73