PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g13740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 839aa    MW: 95943.9 Da    PI: 7.0684
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g13740.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.88.3e-14168252285
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                        Yn+YAk+vGFs+++++s+ks ++ge  k  fvC+k g +e++ +    k+r+++ + +   ka+++vk++   k+ ++k+   H
  LOC_Os06g13740.1 168 HYNRYAKRVGFSIKINTSRKSAKDGERDKVMFVCNKCGPEEKTGEVcPPKKRKRSRTRQAAWKARMTVKRKGARKFSLKKFLRSH 252
                       6**************************************99999884444555555556788*****************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-11168252IPR004330FAR1 DNA binding domain
PfamPF105512.3E-32362456IPR018289MULE transposase domain
PROSITE profilePS509668.716644680IPR007527Zinc finger, SWIM-type
PfamPF044345.7E-5654677IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MDFDLNSIPE LVSGENEPPV HHLLVDDKDK SETYFPINPT DTSMEIPAIN LDDTFDFETM  60
YTAGDAGSLQ AHNVANDEMQ VFEANDEMQI FEGDYEMQVF EEMSDRGDTM HTSVATGATT  120
ATANTISSED SRTDDSEAQS APSQDIPCST QVPYLTLTFN SEEEARAHYN RYAKRVGFSI  180
KINTSRKSAK DGERDKVMFV CNKCGPEEKT GEVCPPKKRK RSRTRQAAWK ARMTVKRKGA  240
RKFSLKKFLR SHRAIPKEEK DFITMLHGVN LSAGRIMQLM SELYGGARNV PYTRKDISNF  300
KSKLGSEYRC RDIPETIAHF EEIKKDDPNF FYKIQLDKED RVQNIFWVDG AARNAYKDFK  360
DCISFDCTYM TNMYNMPCAP FIGLNKHGQS IQLGCGFLRN EKTETFVWLF QAFLEAMEGV  420
EPTNIITDQD LAMKAAIALV FPHAKHRNCH WHIMQNAQKK IGHILDHDKA LCDAFNDCLD  480
NSWTEQEFDA KWDAMLTTYH LQDNEHFRHL WEMRQCWVPV YFMHCFFPFL QTTARSEGFN  540
AVLKRYVNPQ NSIYNFFLQY KKIQEKITVA TDQNEFEAEE TIPSMWGNYP METKALEVYT  600
RPIFNRFQKE LIASTSYKLT RTSENMYLVE PNGGPVRNYG SRAFIVAANV LDRTYNCECC  660
KFERDGILCC HVLKVMTSDF VGQVSDIPEH YILPRWTMVK EPELPPVTSI GEQMQLPPES  720
LKLIRYTNLC TKFTQIAKDA SSNEKAYRMA LQRMSSMTDD LAAMKQSRKK QKKAQPAPAD  780
PARGISDIPS ASTNPTLQIN DPPIIQKQGR PVSTRRKPGV HAKASKTSVR KGLASTEK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g13740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g13740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAP0040270.0AP004027.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1136_C11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8B4I10.0B8B4I1_ORYSI; Putative uncharacterized protein
STRINGLOC_Os06g13740.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1361125
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-105FAR1-related sequence 5