PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g12210.1
Common NameBHLH172, BU1, ILI4, LOC4340551, Os06g0226500, OsJ_20669
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 88aa    MW: 9746.99 Da    PI: 9.335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g12210.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.7e-0815541554
                      HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      +iN+ +++L++llP++ + ++   s    L++++ YIksL
  LOC_Os06g12210.1 15 EINELISKLQSLLPSSRRRGANQASTTKLLKETCSYIKSL 54
                      7**************7567777799999***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.055154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-101477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-91469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-51554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009741Biological Processresponse to brassinosteroid
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:0040008Biological Processregulation of growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSRRSSRSS VSEEEINELI SKLQSLLPSS RRRGANQAST TKLLKETCSY IKSLHREVDD  60
LSDRLSDLMA GMDHNSPGAE IIRSLLR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.239011e-148flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0DDF6
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem of leaf blades and sheaths, lamina joints, filaments before anthesis, vasculare bundles of the ovule, lemma and palea, and embryos. {ECO:0000269|PubMed:19648232}.
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of brassinsteroid (BR) response. Controls lamina inclination by participating in two BR signaling pathways involving BRI1 and RGA1. {ECO:0000269|PubMed:19648232}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g12210.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinolide. Repressed by abscisic acid (ABA). {ECO:0000269|PubMed:19648232}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g12210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8322841e-146CT832284.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA029F08, full insert sequence.
GenBankAK0716011e-146AK071601.1 Oryza sativa Japonica Group cDNA clone:J023102C01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642646.14e-55PREDICTED: transcription factor ILI4
SwissprotA2YAW85e-57ILI4_ORYSI; Transcription factor ILI4
SwissprotQ0DDF65e-57ILI4_ORYSJ; Transcription factor ILI4
TrEMBLA0A0E0DZC44e-55A0A0E0DZC4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HMY44e-55A0A0E0HMY4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0L9K54e-55A0A0E0L9K5_ORYPU; Uncharacterized protein
TrEMBLI1Q0V04e-55I1Q0V0_ORYGL; Uncharacterized protein
STRINGBGIOSGA022576-PA1e-54(Oryza sativa Indica Group)
STRINGLOC_Os06g12210.11e-54(Oryza sativa Japonica Group)
STRINGORGLA06G0076300.11e-54(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8216416
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.14e-27bHLH family protein
Publications ? help Back to Top
  1. Tanaka A, et al.
    BRASSINOSTEROID UPREGULATED1, encoding a helix-loop-helix protein, is a novel gene involved in brassinosteroid signaling and controls bending of the lamina joint in rice.
    Plant Physiol., 2009. 151(2): p. 669-80
    [PMID:19648232]
  2. Carretero-Paulet L, et al.
    Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae.
    Plant Physiol., 2010. 153(3): p. 1398-412
    [PMID:20472752]