PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g10880.2
Common NameOsJ_20562
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 325aa    MW: 34770.8 Da    PI: 5.6074
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g10880.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.43.7e-14244296556
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk.eleelkkev 56 
                       +r+rr++kNRe+A rsR+RK+a+i eLe +v++L+++  +L+k ++e+++k+ 
  LOC_Os06g10880.2 244 RRQRRMIKNRESAARSRARKQAYIMELEAEVAKLKEQKAELQKkQVEMIQKQN 296
                       79*************************************99741455555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.1E-13240305IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.657242287IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.39E-10244294No hitNo description
PfamPF001701.2E-11244296IPR004827Basic-leucine zipper domain
CDDcd147074.70E-24244291No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-14244300No hitNo description
PROSITE patternPS000360247262IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MELPADGSAL ARQGSIYSLT FDEFQSALGS AEKDFGSMNM DELLRNIWTA EESQAIAPAA  60
AAASAAAVVG DAQQQQQPIQ RQGSLTLPRT LSQKTVDEVW RDIMGLGGSD DEDPAAAAAA  120
AAPAQRQPTL GEMTLEEFLV RAGVVREDMG QTIVLPPQAQ ALFPGSNVVA PAMQLANGML  180
PGVVGVAPGA AAAMTVAAPA TPVVLNGLGK VEGGDLSSLS PVPYPFDTAL RVRKGPTVEK  240
VVERRQRRMI KNRESAARSR ARKQAYIMEL EAEVAKLKEQ KAELQKKQVE MIQKQNDEVM  300
ERITQQLGPK AKRFCLRRTL TGPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.542990.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329883970.0
Expression AtlasB9FS56-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g10880.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g10880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU5527830.0GU552783.1 Oryza sativa Japonica Group putative expressed bZIP transcription factor mRNA, complete cds.
GenBankAK1053120.0AK105312.1 Oryza sativa Japonica Group cDNA clone:001-117-D06, full insert sequence.
GenBankAK1031880.0AK103188.1 Oryza sativa Japonica Group cDNA clone:J033121M03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640996.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
SwissprotQ9M7Q55e-78AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBLB9FS560.0B9FS56_ORYSJ; Uncharacterized protein
STRINGLOC_Os06g10880.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.16e-36ABA-responsive element binding protein 3