PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g09760.1
Common NameB1172G12.8, LOC107281240
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 125aa    MW: 13393.2 Da    PI: 9.7514
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g09760.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-182170255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr +  +g+WvAeIr p     +  kr++lg+++++e+Aa+a +aa  +l+g
  LOC_Os06g09760.1 21 KYRGVRLRQ-WGKWVAEIRLP-----NslKRIWLGSYDSPEKAARAFDAAFICLRG 70
                      8*****998.**********9.....448*********************999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.1E-272082IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-192181IPR016177DNA-binding domain
CDDcd000182.13E-262182No hitNo description
SMARTSM003806.8E-302186IPR001471AP2/ERF domain
PfamPF008475.2E-112170IPR001471AP2/ERF domain
PROSITE profilePS5103221.9572180IPR001471AP2/ERF domain
PRINTSPR003671.9E-92233IPR001471AP2/ERF domain
PRINTSPR003671.9E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MLLPRTDCQA NGTSPAPVER KYRGVRLRQW GKWVAEIRLP NSLKRIWLGS YDSPEKAARA  60
FDAAFICLRG GEAIAGLNFP ESPPTVVART SDPREVLAYA TSHANRLGCH HCTGRSSSGG  120
GGDG*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ69K69
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g09760.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g09760
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060560.0AP006056.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1172G12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642231.19e-88ethylene-responsive transcription factor ERF018
SwissprotQ9S7L52e-30ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLQ69K692e-86Q69K69_ORYSJ; AP2 domain transcription factor-like
STRINGORGLA06G0057300.13e-66(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]