PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g09420.1
Common NameLOC4340385, Os06g0194400, P0648E08.15, P0698A06.41
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 238aa    MW: 27559 Da    PI: 9.525
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g09420.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-17139229199
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f+k +++s+v+   +l+lp +f +++  + +++ t++l de+  +++  +    ++++  l++GW++F  a++L +gD +vF+l++r++f  +
  LOC_Os06g09420.1 139 FVKPMLQSHVTGGFWLSLPTHFSRKYL-P-KRDETIRLVDEEDDEFDTLY--LANKRG--LSGGWRGFSIAHKLVDGDCLVFQLIQRTKF--K 223
                       89************************5.3.35669***************..555555..9************************99999..9 PP

                       EEEE-S CS
                B3  94 vkvfrk 99 
                       v ++r+
  LOC_Os06g09420.1 224 VYIIRA 229
                       999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.12E-24132230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-20133230IPR015300DNA-binding pseudobarrel domain
CDDcd100175.76E-27137228No hitNo description
SMARTSM010192.3E-19139230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899139230IPR003340B3 DNA binding domain
PfamPF023621.6E-15139229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MIEAESQMAE AASYEEQRRR QVEANKRKLE ELRLHHLSAA VRESASKPSP VKQRKRKARA  60
LPGAGEDAPL RRSGRVANLP EKPKYRDEFQ DFEKRIRRSY GGKRRDLSNR VYATDEQRDY  120
AINAAQELEE ELGSDYPIFV KPMLQSHVTG GFWLSLPTHF SRKYLPKRDE TIRLVDEEDD  180
EFDTLYLANK RGLSGGWRGF SIAHKLVDGD CLVFQLIQRT KFKVYIIRAS SYYETDD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.496550.0callus| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329881890.0
Expression AtlasQ69V36-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g09420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g09420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029800.0AK102980.1 Oryza sativa Japonica Group cDNA clone:J033115O10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642147.11e-175PREDICTED: B3 domain-containing protein Os06g0194400
SwissprotQ69V361e-177Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A0E0HM371e-175A0A0E0HM37_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PUL91e-175A0A0E0PUL9_ORYRU; Uncharacterized protein
STRINGLOC_Os06g09420.11e-175(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.17e-63B3 family protein