PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os06g09390.2
Common NameLOC4340383, Os06g0194000, OSNPB_060194000, P0648E08.7, P0698A06.33
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 363aa    MW: 39764.3 Da    PI: 4.5227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os06g09390.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-19114163255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +++G+r+++ +g+W+AeIrdp++     r++lg+f ++eeAa+a++a +++++g
  LOC_Os06g09390.2 114 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDAEARRIRG 163
                       69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-35114177IPR001471AP2/ERF domain
PROSITE profilePS5103223.314114171IPR001471AP2/ERF domain
CDDcd000187.28E-31114172No hitNo description
SuperFamilySSF541712.68E-21114172IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.0E-31114172IPR001471AP2/ERF domain
PRINTSPR003673.7E-10115126IPR001471AP2/ERF domain
PfamPF008472.0E-11115163IPR001471AP2/ERF domain
PRINTSPR003673.7E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MCGGAILSDL IPPPRRVTAG DLWLEKTKKQ QQQKKKNKGA RRLPLRQEEE DDFEADFEEF  60
EVDSGEWEVE SDADEAKPLA APRSGFAKGG LKNTTVAGAD GPAARSAKRK RKNQFRGIRQ  120
RPWGKWAAEI RDPRKGVRVW LGTFNSPEEA ARAYDAEARR IRGKKAKVNF PDGAPVASQR  180
SHAEPSSMNM PAFSIEEKPA VMSAGNKTMY NTNAYAYPAV EYTLQEPFVQ IQNVSFVPAM  240
NAIEDTFVNL SSDQGSNSFG CSDFSQENDI KTPDITSMLA PTMTGVDDSA FLQNNASDAM  300
VPPVMGNASI DLADLEPYMK FLIDGGSDES IDTLLSSDGS QDVASSMDLW SFDDMPVSAE  360
FY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A8e-19114171563ATERF1
2gcc_A8e-19114171563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.71770.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329798570.0
Expression AtlasQ69Y47-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os06g09390.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs06g09390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1907700.0AF190770.1 Oryza sativa EREBP-like protein (tsh1) mRNA, complete cds.
GenBankEU8372570.0EU837257.1 Oryza sativa Japonica Group clone KCS063A06 EREBP transcription factor mRNA, complete cds.
GenBankDQ8492890.0DQ849289.1 Oryza sativa (indica cultivar-group) ethylene-responsive factor 15 (ERF-15) mRNA, complete cds.
GenBankAK0698330.0AK069833.1 Oryza sativa Japonica Group cDNA clone:J023031B06, full insert sequence.
GenBankAK0607420.0AK060742.1 Oryza sativa Japonica Group cDNA clone:001-032-E01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643752.10.0PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-121ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLQ0PEM00.0Q0PEM0_ORYSI; Ethylene-responsive factor 15
TrEMBLQ9SP160.0Q9SP16_ORYSA; EREBP-like protein
TrEMBLA0A0E0PUL50.0A0A0E0PUL5_ORYRU; Uncharacterized protein
TrEMBLQ69Y470.0Q69Y47_ORYSJ; EREBP transcription factor
STRINGLOC_Os06g09390.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.22e-39related to AP2 2